| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,316,823 – 5,316,924 |
| Length | 101 |
| Max. P | 0.989636 |
| Location | 5,316,823 – 5,316,924 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Shannon entropy | 0.38950 |
| G+C content | 0.52951 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -13.96 |
| Energy contribution | -15.19 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5316823 101 + 27905053 GUCUGCUGGCAACCUCCGCCAGCAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCCGCACCGC-- ((.(((((((.......)))))))))..........(((..((.((((.((((((.........))))))((......))....)))).))...)))....-- ( -25.30, z-score = -2.80, R) >droSim1.chr3R 11501348 101 - 27517382 GUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCGACCACCCGCCACCCC-- ((.(((((((.......)))))))))...........((..((.((((.((((((.........))))))((......))....)))).))..))......-- ( -22.70, z-score = -2.86, R) >droSec1.super_0 4540667 101 - 21120651 GUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCGCCACCCC-- ((.(((((((.......)))))))))...........((..((.((((.((((((.........))))))((......))....)))).))..))......-- ( -22.70, z-score = -2.80, R) >droYak2.chr3R 9366306 103 + 28832112 GUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACACCACCUCCCCCCAAACCCC ((((((((((.......))))))...................(((..(.((((((.........)))))).)..)))))))...................... ( -21.80, z-score = -3.46, R) >droEre2.scaffold_4770 1461763 96 - 17746568 GUCUGCUGGCAACCUUCGCCAGUAAGAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCCCCCCCCCCUU------- ((((((((((.......))))))...................(((..(.((((((.........)))))).)..)))))))...............------- ( -21.80, z-score = -3.65, R) >droAna3.scaffold_13340 18967514 91 - 23697760 GUCGGCUGGCAACCUCCUUCAGUAACAUCAAUGUUUUGCUUGUUGUCGCUUGCUUUUCCAUUCCAAGCAGUCCC-GUCCCCAACUAACCACC----------- (.(((..((((((......(((.((((....)))))))...))))))(((((...........)))))....))-).)..............----------- ( -15.00, z-score = -0.78, R) >droWil1.scaffold_181089 2709575 85 - 12369635 GUCUGCUGGCAACCUUCUCCAGUAACAUCAAUGUUUUGCUUCUUGUCGUUUGCUCUGCCAUCU-------UCUUCUCUACCACCCAUUCCCC----------- ....((.(((((.(..(...(((((((....)))..))))....)..).)))))..)).....-------......................----------- ( -7.20, z-score = -0.16, R) >consensus GUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCGACCACCCCCCA___C__ ((((((((((.......)))))).........(..(((((((..((.(.........).))..)))))))..)....))))...................... (-13.96 = -15.19 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:59 2011