Locus 9263

Sequence ID	dm3.chr3R
Location	5,308,190 – 5,308,281
Length	91
Max. P	0.697042

overview

Window 7

Location	5,308,190 – 5,308,281
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	88.46
Shannon entropy	0.18795
G+C content	0.44399
Mean single sequence MFE	-26.51
Consensus MFE	-21.26
Energy contribution	-22.20
Covariance contribution	0.94
Combinations/Pair	1.11
Mean z-score	-1.78
Structure conservation index	0.80
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.44
SVM RNA-class probability	0.697042
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 5308190 91 - 27905053
AUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUUUGUAUCCGUAUCUGUGUGGGCAUCCCAUUGUUGGCACU
...(((((((.....(((....((((((...((.(((((....))))).))...))).)))...))).(((((...))))))))))))... ( -26.50, z-score =  -1.61, R)
>droSim1.chr3R 11492454 91 + 27517382
AUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUCUGUAGCCGCAUCUGUAUGGGCAUCCCAUUGUUGGCACU
...(((((((.............(((((((.(((((((.....((((......))))...)))))))...)))))))....)))))))... ( -26.73, z-score =  -0.96, R)
>droSec1.super_0 4532373 91 + 21120651
AUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUUUGUGUAUCCGUAUCUGUAUGGGCAUCCCAUUGUUGGCACU
...(((((((((((.......)))))))....((((((....((((((....))))))(((((....)))))))))))......))))... ( -27.20, z-score =  -1.86, R)
>droEre2.scaffold_4770 1450947 85 + 17746568
AUCGCCAGCAUUAGUCAGCUUUUGGUGCCUUCGGAUGUA--GAUAUCUGUAUCCAUAUCUGUAUCUGUGU----AUCCCAUUGUUGGCACU
...(((((((..((....))...(((((...((((((((--(((((........))))))))))))).))----)))....)))))))... ( -25.60, z-score =  -2.70, R)
>consensus
AUCGCCAGCAUUAGUCAGUUUUUGGUGCCUUUGGAUGUAUCUGUACAUGUAUCUGUAUCCGUAUCUGUAUGGGCAUCCCAUUGUUGGCACU
...(((((((((((.......)))))))....((((((..(((((((.((((........)))).)))))))))))))......))))... (-21.26 = -22.20 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:58 2011