| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,256,421 – 5,256,514 |
| Length | 93 |
| Max. P | 0.998951 |
| Location | 5,256,421 – 5,256,514 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.26 |
| Shannon entropy | 0.44084 |
| G+C content | 0.39769 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -16.26 |
| Energy contribution | -18.48 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.56 |
| SVM RNA-class probability | 0.998951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5256421 93 + 27905053 --ACGGUGGCUUUUGCCAUCUCUUCGAUUUAUUGCUCAUUUUGUUUUGUGGUCGGUGCUAAGCGGGCACGAACAACAGCAAAAUGAGUAAAAAAA---------------------- --..((((((....)))))).......(((.(((((((((((((..(((.((..(((((.....)))))..)).)))))))))))))))).))).---------------------- ( -34.80, z-score = -4.55, R) >droSim1.chr3R_random 336758 97 + 1307089 --UCGGUGGCUUUUGCCAUCUCUUCGAUUUAUUGCUCAUUUUGCUUUGUGGUCGCUGCUAAGCGGGCACGAACAACAGCAAAAUGAGUAAAAAAAAAUA------------------ --..((((((....)))))).......(((.(((((((((((((((((((.(((((....))))).))))).....)))))))))))))).))).....------------------ ( -40.90, z-score = -6.51, R) >droSec1.super_0 4481314 96 - 21120651 --UCGGUGGCUUUUGCCAUCUCUUCGAUUUAUUGCUCAUUUUGCUUUGUGGUCGCUGCUAAGCGGGCACGAACAACAGCAAAAUAAGUAAAAAAAACA------------------- --..((((((....)))))).......(((.(((((.(((((((((((((.(((((....))))).))))).....)))))))).))))).)))....------------------- ( -34.70, z-score = -4.68, R) >droEre2.scaffold_4770 1399300 100 - 17746568 --UCGGUGGCUUUUGCCACCUCUUCGAUUUAUUGCUCAUUUUGCUUUGUGGUCGCUGCUAAGCGGCCACGAACAACAACAAAAUAAGUAAAAAAAAAAAAAA--------------- --..((((((....)))))).......(((.(((((.((((((.((((((((((((....))))))))))))......)))))).))))).)))........--------------- ( -37.10, z-score = -6.29, R) >droPer1.super_7 1178736 116 + 4445127 UUUCGGUGGCUCU-GCCCUCUCUUCGAUUUAUUGCUCAUUUGGUUUUGUGGUCACUGCACAAAAAACCGAAAAAGAAACGCAAAUAACAAAAAAUAAAGAAAAACCACACACACACA ....((((((...-)))..............((((((.((((((((((((.......))))..))))))))...))...))))....................)))........... ( -16.50, z-score = 0.57, R) >dp4.chr2 27630846 114 - 30794189 UUUCGUUGGCUCU-GCCCUCUCUUCGAUUUAUUGCUCAUUUGGUUUUGUGGUCACUGCACAAAAAACCGAAAAAGAAACGCAAAUAACAAAAAAUAAAGAAAAACCACACACACA-- (((((..(((...-)))..)...........((((((.((((((((((((.......))))..))))))))...))...))))...............)))).............-- ( -15.40, z-score = 0.56, R) >consensus __UCGGUGGCUUUUGCCAUCUCUUCGAUUUAUUGCUCAUUUUGCUUUGUGGUCGCUGCUAAGCGGGCACGAACAACAACAAAAUAAGUAAAAAAAAAA___________________ ....((((((....)))))).......(((.(((((.(((((((((((((.(((........))).))))).....)))))))).))))).)))....................... (-16.26 = -18.48 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:50 2011