| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,253,080 – 5,253,170 |
| Length | 90 |
| Max. P | 0.737180 |
| Location | 5,253,080 – 5,253,170 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.88 |
| Shannon entropy | 0.31020 |
| G+C content | 0.45036 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -11.85 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.737180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5253080 90 + 27905053 ACACACCUC-UCAUAUUCUCCGCUCUCGAGGCCAUUACUCACCCAUUUUGUGGACAAAUCCAUUUUUUUUU---AACAUUUUCCUCGGCGUGGA .........-........(((((.(.(((((..(...............(((((....)))))........---.....)..)))))).))))) ( -16.09, z-score = -1.93, R) >droEre2.scaffold_4770 1395998 88 - 17746568 GCACACCCCCUUUUACUCUCCGCUCUCGAGGCCAUUACUCACCUACUUUGUGGAUAUAUCUAUUAUUCU------ACCUUUUCCUCGGCGUGGA ..................(((((.(.(((((..................(((((.(((.....))))))------)).....)))))).))))) ( -15.20, z-score = -1.51, R) >droYak2.chr3R 9300298 88 + 28832112 GCACACCCCCUUUUAUUCUCCGUUCUCGAGGCCAUUACUCAACUACUUUGUGGGUACAUCAAUUUUUCA------ACAUUUUCCUCGGCGUGGA ..................((((..(.(((((....((((((.(......))))))).............------.......))))))..)))) ( -12.95, z-score = 0.16, R) >droSec1.super_0 4477999 83 - 21120651 -------GC-UCAUAUUCUCCGCUCUCGAGGCCAUUACUCACCCACUUUGUGGACAAAUCCAUUUUUUUUU---AACAUUUUCCUCGCCGUGGA -------..-........(((((...(((((..(...............(((((....)))))........---.....)..)))))..))))) ( -14.29, z-score = -1.64, R) >droSim1.chr3R 11442282 93 - 27517382 GCACACCCC-UCAUAUUCUCCAUUCCCGAGGCCAUUACUCACCCACUUUGUGGACAAAUCCAUUUUUUUUUUUUAACAUUUUCCUCGCCGUGGA .........-........(((((...(((((..((..............(((((....)))))..............))...)))))..))))) ( -13.49, z-score = -1.55, R) >consensus GCACACCCC_UCAUAUUCUCCGCUCUCGAGGCCAUUACUCACCCACUUUGUGGACAAAUCCAUUUUUUUUU___AACAUUUUCCUCGGCGUGGA ..................(((((...(((((..((..............(((((....)))))..............))...)))))..))))) (-11.85 = -11.57 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:49 2011