| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,220,943 – 5,221,035 |
| Length | 92 |
| Max. P | 0.804831 |
| Location | 5,220,943 – 5,221,035 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Shannon entropy | 0.49553 |
| G+C content | 0.54701 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.67 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5220943 92 + 27905053 GGACAGCUGACAGGAUCUAAGGACGAA-CACCCAACCAGUCAAA--------CACC----CACCCACUGUGAG--UCGCUGUGGAAACGGAAGCAGCUGAGCUGUAA ..(((((((((..........(((...-..........)))...--------....----(((.....))).)--))((((((....)....)))))..)))))).. ( -22.02, z-score = 0.52, R) >droAna3.scaffold_13340 18873095 107 - 23697760 CGACAGCUGUCAGAAUCCAGAGACAGUCCAGGCCAUUAGCAGCACCACCACCACUAGCACCACCCACCAAAACAUUCGUCCUGGCAACGGAAGCAGCUGAAAUGUAA ...(((((((......((((.(((.......((.....)).((.............))...................)))))))........)))))))........ ( -20.86, z-score = -0.19, R) >droEre2.scaffold_4770 1359715 101 - 17746568 CGACAGCUGGCAGGAUCUAAGGACGAAACUCCCAAACACCCAGACAUCUAAACACC----CACCCACUGUGGG--UCGCUUUGGAAACGGAAGCAGCUGAGCUGUAA ..((((((((.((..((.......))..)).)).......(((.(........(((----(((.....)))))--).((((((....).))))).)))))))))).. ( -30.10, z-score = -1.56, R) >droSec1.super_0 4445971 98 - 21120651 CGACAGCUGACAGGAUCUAAGGACGAA-CACCCAACCAGUGAAACACCCA--CCCA----CACCCACUGUGGG--UCGCUUUGGAAACGGAAGCAGCUGAGCUGUAA ...((((((...(..(((((((.(((.-(((.......))).........--((((----((.....))))))--))))))))))..).....))))))........ ( -31.30, z-score = -2.16, R) >droSim1.chr3R_random 330352 82 + 1307089 CGACAGCUGGCAGGAUCUAAGGACGAA-CACCCA------------------CCCA----CACCCACUGUGGG--UCGCUUUGGAAACGGAAGCAGCUGAGCUGUAA ..(((((((((.........((.....-...))(------------------((((----((.....))))))--).((((((....).))))).))).)))))).. ( -30.00, z-score = -2.23, R) >consensus CGACAGCUGACAGGAUCUAAGGACGAA_CACCCAACCAGCCAAAC__C_A__CCCA____CACCCACUGUGGG__UCGCUUUGGAAACGGAAGCAGCUGAGCUGUAA ...((((((......(((((((.(((....((((...................................))))..))))))))))..(....)))))))........ (-17.11 = -17.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:46 2011