| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,212,766 – 5,212,879 |
| Length | 113 |
| Max. P | 0.529868 |
| Location | 5,212,766 – 5,212,879 |
|---|---|
| Length | 113 |
| Sequences | 7 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 73.33 |
| Shannon entropy | 0.52219 |
| G+C content | 0.39824 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -13.28 |
| Energy contribution | -15.16 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5212766 113 + 27905053 UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUCGGGGUUCAAGACACAUUCAGAAUUUAUGCCCCAAAAUGGUUGUAU------ACGAAACGCAUUUGCGACCCUGUACUUGGCUCA-- ...(((((....((.(((..((((((.(.(((((.(((((......................))))).))))).))))))------)..))).))....)))))((.......))....-- ( -27.55, z-score = -0.47, R) >droWil1.scaffold_181089 9370127 85 - 12369635 --------------------------UAAUAGUUCUAGUUUUCUAAACUAUCCAAAAACCAAG----GAACUCGCAUUCU------AAGUAGCCAUUUUUCGCCCCCUUGUGUAUUACUAC --------------------------..((((((.(((....)))))))))......((((((----(.....((.....------..)).((........))..))))).))........ ( -9.60, z-score = -0.51, R) >droAna3.scaffold_13340 18864462 110 - 23697760 UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUU-AGGGAUCAAGAC--AUCGAGAAUUUAUGGCCAGAAAUGGUAAUAU------ACGAAACGCAUUUGUGACCCUGUACUUGGCUCA-- (((((.(((...((((.....))))..)))))))-)(((.(((((((--((((......(((.((((....)))).))).------.)))..(((....)))....))).)))))))).-- ( -25.00, z-score = -0.39, R) >droEre2.scaffold_4770 1351519 117 - 17746568 UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUUGGGGUUCAAGAC--AUUCAGAAUUUAUGCCCUGAAAUGCCUGUACUCGCAAACGAAAAGCAUUUGCGACCCUGUACUUGGCUCA-- ..((((.....(((((((((.(.((((((.(((((((((((...)))--.))))))))))))))).))))))))).(((((((((((.(.....).)))))))....))))..))))..-- ( -33.50, z-score = -1.76, R) >droYak2.chr3R 9259396 117 + 28832112 UAGGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUUGGGGUUCAAGAC--AUUCAGAAUUUAUGCCCCAAAAUGCUGGUACUCGCAUACGAAGAGCAUUUGCGACCCUGUACUUGGCUCA-- ..((((((....((.(((..(((((.((((((((((((((.......--.............))))))))))))))......)))))..))).))....))))))..............-- ( -38.65, z-score = -2.77, R) >droSec1.super_0 4437883 113 - 21120651 UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUUGGGGUUCAAGACACAUUCAGAAUUUAUGCCCCAAAAUGGUUGUAU------ACGAAACGCAUUUGCGACCCUGUACUUGGCUCA-- ...(((((....((.(((..((((((.(.(((((((((((......................))))))))))).))))))------)..))).))....)))))((.......))....-- ( -31.65, z-score = -1.68, R) >droSim1.chr3R_random 321288 113 + 1307089 UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUUGGGGUUCAAGACACAUUCAGAAUUUAUGCCCCAAAAUGGUUGUAU------ACGAAACGCAUUUGCGACCCUGUACUUGGCUCA-- ...(((((....((.(((..((((((.(.(((((((((((......................))))))))))).))))))------)..))).))....)))))((.......))....-- ( -31.65, z-score = -1.68, R) >consensus UAAGUUGUUUUGGCAUUUUAUGUGCAUAGCAUUUUGGGGUUCAAGAC__AUUCAGAAUUUAUGCCCCAAAAUGGUUGUAU______ACGAAACGCAUUUGCGACCCUGUACUUGGCUCA__ .......(((((((((.....))))....(((((((((((......................)))))))))))..............))))).((....))((.((.......)).))... (-13.28 = -15.16 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:45 2011