| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,212,360 – 5,212,423 |
| Length | 63 |
| Max. P | 0.858345 |
| Location | 5,212,360 – 5,212,423 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 71.18 |
| Shannon entropy | 0.54712 |
| G+C content | 0.46764 |
| Mean single sequence MFE | -9.78 |
| Consensus MFE | -5.14 |
| Energy contribution | -4.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5212360 63 + 27905053 AUGGAGUUACGACCUCCUCCGUGCCACCCUCCGCAUAGAAAAAAUAACAAAUCGUUAUCCAAU- .((((...((((.....((..(((........)))..))............))))..))))..- ( -9.73, z-score = -2.02, R) >droAna3.scaffold_13340 18863974 58 - 23697760 AUGGGGGUAUGGGGGUAUGCCC--UGCCCCUCGCCACGGUAAAGUAA----UCGUUAUCCAAUG .(((((((..(((((((.....--))))))).)))(((((......)----))))..))))... ( -20.00, z-score = -0.46, R) >droEre2.scaffold_4770 1351121 59 - 17746568 AUGGAGUUGCGACCUCCUCCUU--UGCCCC--GC-CAUAAAAAAUAACAAAUCGUUAUCCAAUG ((((....((((.........)--)))...--.)-))).....(((((.....)))))...... ( -6.70, z-score = -0.95, R) >droYak2.chr3R 9258988 61 + 28832112 AUGGAGCUGCGUCCUCCUCCUU--CGCCCCCAAC-CGUGAAAAAUAACAAAUCGUUAUCCAAUG .((((...(((.........((--(((.......-.)))))...........)))..))))... ( -9.65, z-score = -2.30, R) >droSec1.super_0 4437489 57 - 21120651 AUGGAGUUACGACCUCCUCCCC----CCACCCAU---AAAAGAAUAACAAAUCGUUAUCCAAUG ..((((.......)))).....----........---....(.(((((.....))))).).... ( -6.30, z-score = -1.45, R) >droSim1.chr3R_random 320892 57 + 1307089 AUGGAGUUACGACCUCCUCCCC----CCACCGAU---AAAAGAAUAACAAAUCGUUAUCCAAUG ..((((.......)))).....----........---....(.(((((.....))))).).... ( -6.30, z-score = -0.97, R) >consensus AUGGAGUUACGACCUCCUCCCC___GCCCCCCAC___AAAAAAAUAACAAAUCGUUAUCCAAUG .((((...((((.......................................))))..))))... ( -5.14 = -4.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:44 2011