| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,210,059 – 5,210,163 |
| Length | 104 |
| Max. P | 0.567351 |
| Location | 5,210,059 – 5,210,163 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 68.63 |
| Shannon entropy | 0.41975 |
| G+C content | 0.53217 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -17.22 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5210059 104 - 27905053 AUUACG-CCCAUGUCAUGUGGCCAUCCGUGUCCAUGUUAGCCAUGGCAACAGCCUGGCCCUUAACUC-GUUGGCAUUGGUUAGGCCAGACCAGAGCAGACUAGACC .....(-(.(..(((...(((((..(((((.(((.((((((((.(((....)))))))...))))..-..))))).)))...))))))))..).)).......... ( -31.80, z-score = -0.49, R) >droSim1.chr3R 11409035 94 + 27517382 AUUUCG-ACCAUGUCAUGUGGCCAUCCGUGUCCGUGUUAGCCAUGGCAACAGCCUGGCCCUUAACUC-GUUGGCAUUGGUUAGGCCAGACUAGACC---------- ......-.....(((.(.(((((..(((((((((.((((((((.(((....)))))))...)))).)-)..)))).)))...))))).)...))).---------- ( -31.60, z-score = -1.48, R) >droAna3.scaffold_13340 18860933 85 + 23697760 AUUUCGUUUCGUGUCAUGUGGCC--------CCAUGU---CCAUGGUUACGGGCUGGCCCUUAACUCUACAGUUUUUCGUUUGCCCAGACACACGA---------- ...((((...(((((..((((((--------......---....))))))((((..((....((((....))))....))..)))).)))))))))---------- ( -26.40, z-score = -2.29, R) >consensus AUUUCG_ACCAUGUCAUGUGGCCAUCCGUGUCCAUGUUAGCCAUGGCAACAGCCUGGCCCUUAACUC_GUUGGCAUUGGUUAGGCCAGACAAGAGC__________ ........(((((..(..(((.((....)).)))..)....))))).....((((((((.....(......).....))))))))..................... (-17.22 = -17.20 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:44 2011