| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,807,764 – 6,807,863 |
| Length | 99 |
| Max. P | 0.795508 |
| Location | 6,807,764 – 6,807,863 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Shannon entropy | 0.03898 |
| G+C content | 0.38990 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6807764 99 - 23011544 CCUUUCCCAUUUGACUGUAUUUUGAAUUACUUUGAGCACUCUGCUUUUGUUGAACCCUUGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC ................(((........)))...((((.....))))((((((((.....((.(((((..((......)).))))).))..)))))))). ( -12.40, z-score = -1.36, R) >droSim1.chr2L 6608989 99 - 22036055 CCUUCCCCAUUUGACUGUAUUUUGAAUUACUUUGAGCACUCUGCUUUUGUUGAACCCUUGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC ................(((........)))...((((.....))))((((((((.....((.(((((..((......)).))))).))..)))))))). ( -12.40, z-score = -1.46, R) >droSec1.super_3 2346382 99 - 7220098 CCUUCCCCAUUUGACUAUAUUUUGAAUUACUUUGAGCACUCUGCUUUUGUUGAACCCUUGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC .................................((((.....))))((((((((.....((.(((((..((......)).))))).))..)))))))). ( -12.20, z-score = -1.84, R) >droYak2.chr2L 16223478 99 + 22324452 CCUUCCCCAUUUGACUGUAUUUUGAAUUACUUUGAGCACUUUGCUUUUGUUGAACCCUUGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC ................(((........)))...((((.....))))((((((((.....((.(((((..((......)).))))).))..)))))))). ( -12.40, z-score = -1.67, R) >droEre2.scaffold_4929 15724152 99 - 26641161 CCUUCCCCGUUUGACUGUAUUUUGAAUUACUUUGAGCACUUUGCUUUUGUUGAACCCUGGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC ........(((..(..(((........))).)..))).........((((((((....(((.(((((..((......)).))))).))).)))))))). ( -18.70, z-score = -3.18, R) >consensus CCUUCCCCAUUUGACUGUAUUUUGAAUUACUUUGAGCACUCUGCUUUUGUUGAACCCUUGCUGACGACUUGUUUGUUUAUUUGUUUGCCUUUCGACAAC .................................((((.....))))((((((((.....((.(((((..((......)).))))).))..)))))))). (-12.20 = -12.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:08 2011