| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,184,062 – 5,184,161 |
| Length | 99 |
| Max. P | 0.824945 |
| Location | 5,184,062 – 5,184,161 |
|---|---|
| Length | 99 |
| Sequences | 15 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 73.36 |
| Shannon entropy | 0.53115 |
| G+C content | 0.44663 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -14.31 |
| Energy contribution | -13.41 |
| Covariance contribution | -0.90 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5184062 99 + 27905053 UGGCGCACAGGAAAUCCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAGAUUCAAAAGAUUUGAAU-UUCG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAG-CC------------- (((((((........((((((((((......)))).))))))(((...(((((((.....))))))-))))-----....----)))))))..........-......-..------------- ( -27.90, z-score = -2.17, R) >droSim1.chr3R 11382810 99 - 27517382 UGGCGCACAGGAAAUCCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAGAUUCAAAAGAUUUGAAU-UUCG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAG-CC------------- (((((((........((((((((((......)))).))))))(((...(((((((.....))))))-))))-----....----)))))))..........-......-..------------- ( -27.90, z-score = -2.17, R) >droSec1.super_0 4409582 99 - 21120651 UGGCGCACAGGAAAUCCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAGAUUCAAAAGAUUUGAAU-UUCG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAG-CC------------- (((((((........((((((((((......)))).))))))(((...(((((((.....))))))-))))-----....----)))))))..........-......-..------------- ( -27.90, z-score = -2.17, R) >droYak2.chr3R 9230587 99 + 28832112 CGGCGCACAGGAAAUCCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAGAUUCAAAAGAUUUGAAU-UUCG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAG-CC------------- .(((((((((.....((((((((((......)))).))))))(((...(((((((.....))))))-))))-----...)----)))))..((.......)-)....)-))------------- ( -27.70, z-score = -2.06, R) >droEre2.scaffold_4770 1323123 99 - 17746568 UGGCGCACAGGAAAUCCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAGAUUCAAAAGAUUUGAAU-UUCG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAG-CC------------- (((((((........((((((((((......)))).))))))(((...(((((((.....))))))-))))-----....----)))))))..........-......-..------------- ( -27.90, z-score = -2.17, R) >droAna3.scaffold_13340 18835031 113 - 23697760 UGGCGCACAAGAGAUCCGACGCAAUAAUCCCGUUGUCGUUGGCGAGAAAAUUCAAAAGAUUUGAAU-UUUG-----AUAU----UGUGCCAGUAACAGUAA-CAGUAAACAGUAAACAGUAGCC .(((((((((.....((((((((((......)))).))))))....(((((((((.....))))))-))).-----...)----)))))........((..-......))...........))) ( -26.20, z-score = -1.96, R) >dp4.chr2 27553711 110 - 30794189 CGGUGCACAGGAGAUUCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAAAUUCAAAAGAUUUGAAU-UUUGCGA-GAUAU----UGUGCCAGUAACAGUAAACAGUAA-CAGUAGCC------- .(((((((((.....((((((((((......)))).))))))((..(((((((((.....))))))-))).)).-....)----)))))..((.((........)).)-)....)))------- ( -26.40, z-score = -1.05, R) >droPer1.super_7 1101440 110 + 4445127 CGGUGCACAGGAGAUUCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAAAUUCAAAAGAUUUGAAU-UUUGCGA-GAUAU----UGUGCCAGUAACAGUAAACAGUAA-CAGUAGCC------- .(((((((((.....((((((((((......)))).))))))((..(((((((((.....))))))-))).)).-....)----)))))..((.((........)).)-)....)))------- ( -26.40, z-score = -1.05, R) >droWil1.scaffold_181089 9336174 98 - 12369635 UGGUGCACAGGAGAUUCGACGCAAUAAUCCGGUUGUUGUUGGCGAGAAAAUUCAAAAGAUUUGAAU-UUUUCUAUAAUGU----GCCACCAGUAACAGUAGCC--------------------- (((((((((..(((((((..((((((((...))))))))...))))(((((((((.....))))))-))))))....)))----).)))))............--------------------- ( -26.90, z-score = -2.34, R) >droVir3.scaffold_13047 594474 95 + 19223366 UGGCGCCCAGGAGAUUCGACGCAAUAAUCCGGUUGUAGUUGGCGAGAAAAUCCAAAAGAUUUGAAU-UGCGAG---AGAU----UGUGCCAGUAACAGUAGCC--------------------- ((((((..........(((((((((......))))).))))((((..(((((.....)))))...)-)))...---....----.))))))............--------------------- ( -22.20, z-score = -0.76, R) >droMoj3.scaffold_6540 4574990 98 + 34148556 UGGUGCCCAGGAGAUUCGACGCAAUAAUCCGGUUGUAGUUGGCGAAAAAAUUCAAAAGAUUUGAAU-UGCGAGGAGAGAU----UGUGCCAGUAACAGUAGCC--------------------- .(((..((.(((...............)))))((((..(((((.....(((((((.....))))))-)((((.......)----))))))))..))))..)))--------------------- ( -19.06, z-score = 0.31, R) >droGri2.scaffold_15116 304038 98 + 1808639 UGGCGCACAGGAGAUUCGGCGCAAUAAUCCGGUUGUGGUUGGUGAAAAAAUUCAAAAGAUUUGAAU-UUGCCCGCGAGAU----UGUGCCAGUAACAGUAGCC--------------------- .(((..((.(...(((.((((((((...(((....)))((.(((...((((((((.....))))))-))...))).))))----)))))))))..).)).)))--------------------- ( -25.00, z-score = -0.29, R) >anoGam1.chr2R 19826523 94 - 62725911 CGGUGCUGCAGAAAUUAGGCGUAACAAUCCCGUCGUGGUUGGCGAAAAGAUUCAGAAAAUUUGAACACCCUUCGUGCCAU----CGUAUC-GUAAUAGU------------------------- ((((((...........((((.........))))(((((..(((((....((((((...)))))).....))))))))))----.)))))-).......------------------------- ( -19.60, z-score = 0.39, R) >apiMel3.Group8 9706493 98 - 11452794 GGGCGCUCAAGAGAUUCGGCGCAACAAUCCAGUUGUUGUUGGUGAAAAAGUGCAAAAAAUUUGAAC-UAUUUAG-UGCGUAGAUCGUUGGGAAAAUGGUU------------------------ ..((((.(......((((.(((((((((...))))))).)).))))..(((.(((.....))).))-).....)-.)))).(((((((.....)))))))------------------------ ( -21.20, z-score = -0.00, R) >triCas2.chrUn_77 166200 102 - 283703 GGGGGCGCAAGAGAUUCGACGUAACAAUCCAGUGGUCGUCGGUGAAAAAAUCCAAAAAAUAUGAAC-CCCGCCACACAGUGCCAUGCACCAAUAAAAAUAAUC--------------------- ((((.(....)....((((((..((......))...)))))).......................)-)))........((((...))))..............--------------------- ( -21.00, z-score = -0.28, R) >consensus UGGCGCACAGGAGAUUCGACGCAACAAUCCGGUUGUCGUUGGCGAGAAAAUUCAAAAGAUUUGAAU_UUCG_____AUAU____UGUGCCAGUAACAGUAA_CAGUA__C______________ .(((((.........((((((((((......))))).))))).....(((((.....))))).......................))))).................................. (-14.31 = -13.41 + -0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:43 2011