| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,178,783 – 5,178,835 |
| Length | 52 |
| Max. P | 0.788899 |
| Location | 5,178,783 – 5,178,835 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 83.27 |
| Shannon entropy | 0.30553 |
| G+C content | 0.49615 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -12.96 |
| Energy contribution | -13.64 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5178783 52 - 27905053 GAAUGCGUGAGCGGAUGUGUGCAUGUGUGCGUGCGCCUGUGUGCAAUAAAGA ...((((...((((.((..((((....))))..)).)))).))))....... ( -16.20, z-score = -0.74, R) >droSim1.chr3R 11375977 52 + 27517382 AAAUGCGUGAGCGGAUGUGUGCAUGUGUGCGUGCGUCUGUGUGCAAUAAAGA ...((((...(((((((..((((....))))..))))))).))))....... ( -21.10, z-score = -3.40, R) >droSec1.super_0 4404267 52 + 21120651 GAAUGCGUGAGCGAAUGUGUGCAUGUGUGCGUGCGUCUGUGUGCAAUAAAGA ...((((...(((.(((..((((....))))..))).))).))))....... ( -14.90, z-score = -0.74, R) >droEre2.scaffold_4770 1317940 52 + 17746568 GAAUGCGUGAGCGUUUGUUUGCAUGUGUGCGUGCGUCUGUGUGCAAUAAAGA ((((((....))))))..(((((..(..((....))..)..)))))...... ( -16.10, z-score = -1.24, R) >droMoj3.scaffold_6540 4569814 52 - 34148556 GCAGGCUUAUGCGUGCGUGUGGAUGCAUGUGUAUGUAUGUGUGCAUAAAAGA (((.((..(((((((((..((....))..))))))))))).)))........ ( -19.10, z-score = -2.25, R) >consensus GAAUGCGUGAGCGGAUGUGUGCAUGUGUGCGUGCGUCUGUGUGCAAUAAAGA ...((((...(((((((..((((....))))..))))))).))))....... (-12.96 = -13.64 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:42 2011