| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,175,950 – 5,176,050 |
| Length | 100 |
| Max. P | 0.546873 |
| Location | 5,175,950 – 5,176,050 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.30104 |
| G+C content | 0.45757 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -17.84 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5175950 100 + 27905053 CGGUCGUUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUCUCUCGCUCUCCUCUUGGCCUCCUAUUUCUUGGCAUCUUCUUUCUUCCCC--- .(((((.....(((...(((((......)))))..((.(((((....))))).))..))).....))))).((........)).................--- ( -18.00, z-score = -0.13, R) >droSim1.chr3R 11372802 100 - 27517382 CGGCCGUUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUCUCUCGGUCUCCUCUUGGCCUCCUAUUUCUUGGCAUCUUCUUUCUUCCCC--- .(((((.....(((((.(((((......)))))..((.(((((....))))).))))))).....))))).((........)).................--- ( -22.90, z-score = -1.26, R) >droSec1.super_0 4401426 100 - 21120651 CGGCCGUUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUCUCUUGCUCUCCUCUUGGCCUCCUAUUUCUUGGCAUCUUCUUUCUUCCCC--- ..(((((((((......(((((......)))))...)))))))))......................(((...........)))................--- ( -19.20, z-score = -0.35, R) >droYak2.chr3R 9222361 103 + 28832112 CGGCCGUUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUUCCUCGCUCUUCUCUUGGCCUCCUAUUUCUGGGCAUCUUCUUUCUUCUUCCCC .(((((.....(((...(((((......)))))..((.(((((....))))).))..))).....))))).((((....)))).................... ( -21.80, z-score = -0.68, R) >droEre2.scaffold_4770 1315118 100 - 17746568 CGGCCGCUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUCUCUCACUCUCCUCUUGGCCUCCUAUUUCUUGGCAUCUUCUUUCUUCCCC--- ..(((((((((......(((((......)))))...)))))))))......................(((...........)))................--- ( -21.70, z-score = -1.50, R) >droAna3.scaffold_13340 18827850 81 - 23697760 --GCCGUUCGUAGUUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAAC---UCACGCUCCCAUCCCUGACUUGGACU----GGUCUCUUC------------- --((((((((.((((.((((((......)))))..((((((.(((...---....))))))))).).))))))))).----)))......------------- ( -21.00, z-score = -1.68, R) >consensus CGGCCGUUCAUAGAUUGUAAUUUAUUUUGAUUAAUGAUGGGCGGCAACGUCUCUCGCUCUCCUCUUGGCCUCCUAUUUCUUGGCAUCUUCUUUCUUCCCC___ ..(((((((((......(((((......)))))...)))))))))......................(((...........)))................... (-17.84 = -17.45 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:41 2011