| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,169,856 – 5,170,020 |
| Length | 164 |
| Max. P | 0.779074 |
| Location | 5,169,856 – 5,170,020 |
|---|---|
| Length | 164 |
| Sequences | 5 |
| Columns | 164 |
| Reading direction | reverse |
| Mean pairwise identity | 84.69 |
| Shannon entropy | 0.27319 |
| G+C content | 0.39094 |
| Mean single sequence MFE | -40.78 |
| Consensus MFE | -27.77 |
| Energy contribution | -28.01 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5169856 164 - 27905053 UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACUUGCCAAGAAUUAUAAGCGAUUUUUGCCAACAAGGGGAUUAGUCAUCCGGGAUCGGGAAAGUUCUCAAACAAUCGUGACAAACAAUAUCGAUCCAUGAAUCACUAGCGUGAU ..............(((....(((((((((((....)))))))))))((..((((.((((((((......))))))))....))))..))...))).....(((((((....(((.(((........)))..)))....)))))))....(((((....))))) ( -41.60, z-score = -1.84, R) >droSim1.chr3R 11366664 164 + 27517382 UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACGUGCCAAGAAUUUGAAGCGAUUUUCGCCAACAUGGGCAUUAGUCACCCGGGAUCGGGAAAGUUCUCAAACAAUCGUGACAAACAAUAUCGAUCCAUGAAUCACUAGCGUGAU ..............((((((((((((((((((....))))))))))))....(((((......(((..(((.....))))))....)))))..((((((((....)))((..(((....)))..)))))))....)))))).........(((((....))))) ( -43.60, z-score = -1.65, R) >droSec1.super_0 4395280 132 + 21120651 UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACGUGCCAAGA---UUAGGCG------------------AUUAGUCACCCGGCAUCGGGAAAGUUCUCAAACAAUCGUGACAAACAAUAUCGAUCCAUGUGAU----------- .((((((.......((((((((((((((((((....))))))))))))....(((((....---...))).------------------....((((((((....)))((..(((....)))..)))))))..)))))))).....)))))).----------- ( -36.10, z-score = -2.31, R) >droYak2.chr3R 9216190 164 - 28832112 UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACCUGCCAAGAAUUUGAAGUGAUUUUCGCCAACUAGGGGAUUAGUCACUCAGGAACGGGAAAGUUCUCAAACAUUCGUUACAAACAAUAUCGUUUCAUGAAUCACUAGCAUGAU ..............((((((((((((((((((....))))))))))))...........(((((((((((((((.((.((.....)).))..)))))))...((((......))))))))..)))).........))))))...(((((.........))))). ( -42.50, z-score = -2.60, R) >droEre2.scaffold_4770 1308933 157 + 17746568 UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACUUGCCAAGAAUUUGAAGUGAUUUUCGCCAACAAGGGGAUUAGUCACUCGGGAUCGGGAAAGUUCUCAAACAAUCGUGACAAACCAUAUCGUUCCAUGAAUCACAU------- ..............(((...((((((((((((....)))))))))))).(((((.((..((.(((((.((((((.((.((.....)).))..))))))))))).)).)).))))).........(((((...(((......))).))))))))....------- ( -40.10, z-score = -1.75, R) >consensus UUUAUAUAAUUUUAGAUAUUAGCGACAACGACACGUGUUGUUGUUGCUCAACGUGCCAAGAAUUUGAAGCGAUUUUCGCCAACAAGGGGAUUAGUCACCCGGGAUCGGGAAAGUUCUCAAACAAUCGUGACAAACAAUAUCGAUCCAUGAAUCACUAGC_UGAU ..............((((((((((((((((((....)))))))))))).............................................(((((........((((....))))........)))))....))))))....................... (-27.77 = -28.01 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:39 2011