| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,167,646 – 5,167,737 |
| Length | 91 |
| Max. P | 0.959008 |
| Location | 5,167,646 – 5,167,737 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 96.92 |
| Shannon entropy | 0.05061 |
| G+C content | 0.41319 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -23.94 |
| Energy contribution | -24.14 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5167646 91 - 27905053 AAAAGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUGACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG ..........(((((((..((.((((((((((((.....))))))))))))))..)))).))).((.(((..(((....)))..))).)). ( -24.60, z-score = -2.03, R) >droEre2.scaffold_4770 1306724 91 + 17746568 GGUUGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUGACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG ((((.(((((((((.......(((((((((((((.....)))))))))))))(((((....)))))))))))))).))))........... ( -28.80, z-score = -2.97, R) >droYak2.chr3R 9213941 91 - 28832112 GGUUGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUGACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG ((((.(((((((((.......(((((((((((((.....)))))))))))))(((((....)))))))))))))).))))........... ( -28.80, z-score = -2.97, R) >droSec1.super_0 4393109 91 + 21120651 AAAAGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUUACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG .(((((....)))))........(((((((((((.....))))))))((((..(((((((........))))))).)))).......))). ( -23.70, z-score = -1.77, R) >droSim1.chr3R 11364462 91 + 27517382 AAAAGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUGACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG ..........(((((((..((.((((((((((((.....))))))))))))))..)))).))).((.(((..(((....)))..))).)). ( -24.60, z-score = -2.03, R) >consensus AAAAGUGAUUACUUUAUUAUCUAGUUUAGUUAGCAAGGCGCUGACUGGGCUGACGAUGACAGUUGUGGGUAAUUGAAGCCAAAAACCAACG ..........(((((((..((.((((((((((((.....))))))))))))))..)))).))).((.(((..(((....)))..))).)). (-23.94 = -24.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:37 2011