| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,165,189 – 5,165,262 |
| Length | 73 |
| Max. P | 0.660887 |
| Location | 5,165,189 – 5,165,262 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 81.64 |
| Shannon entropy | 0.35002 |
| G+C content | 0.45764 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.45 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5165189 73 + 27905053 GCGCAGAGAAUUUCGUAUGGAUUGGAGGUCUAAACGAAUUUCUGUAUUGCUCGUGGAGGGCAGACAGUGAACA .(((..((((.(((((.(((((.....))))).))))).))))((.((((((.....)))))))).))).... ( -23.10, z-score = -2.54, R) >droSim1.chr3R 11362068 73 - 27517382 GCGCAGAGAAUUUCGAAUGGAUUGGAGGUCUAAACGAAUUUCUGUAUUGCUCGUGGAGGGCAGACAGUGAACA .(((..((((.((((..(((((.....)))))..)))).))))((.((((((.....)))))))).))).... ( -20.50, z-score = -1.62, R) >droSec1.super_0 4390681 73 - 21120651 GCGCAGAGAAUUUCGAAUGGAUUGGAGGUCUAAACGAAUUUCUGUAUUGCUCGUAGAGGGCAGACAGUGAACA .(((..((((.((((..(((((.....)))))..)))).))))((.((((((.....)))))))).))).... ( -20.50, z-score = -1.84, R) >droYak2.chr3R 9211417 73 + 28832112 GCACGGAGAAUUUCGAAUGGAUCGGAGGUCUUAACGAAUUUCUGUAUUGCUCGUGGAGGGCAGACAGUGAACA .(((..((((.((((...((((.....))))...)))).))))((.((((((.....)))))))).))).... ( -21.10, z-score = -1.66, R) >droEre2.scaffold_4770 1304213 73 - 17746568 GCAUAGUGAAUUUCGAAUGGAUUGGAGGUCUUAACGAAUUUCUGUAUUGCUCGUGGAGGGCAGACAGUGAACA .(((...(((.((((...((((.....))))...)))).)))(((.((((((.....)))))))))))).... ( -17.10, z-score = -0.64, R) >droGri2.scaffold_15112 4514609 63 - 5172618 GCGUGGAAAAUUUU-UUUGCAUUGAAGGUGUGAGGAAAAGU---UGUGGCCCUUAAAGCGCAGAGAG------ ............((-(((((.((.((((.((.(.((....)---).).)))))).))..))))))).------ ( -12.70, z-score = -0.17, R) >consensus GCGCAGAGAAUUUCGAAUGGAUUGGAGGUCUAAACGAAUUUCUGUAUUGCUCGUGGAGGGCAGACAGUGAACA ..(((((((..((((..(((((.....)))))..))))))))))).((((((.....)))))).......... (-13.69 = -14.45 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:37 2011