| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,148,317 – 5,148,419 |
| Length | 102 |
| Max. P | 0.512274 |
| Location | 5,148,317 – 5,148,419 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 88.98 |
| Shannon entropy | 0.18573 |
| G+C content | 0.43270 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -16.16 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5148317 102 + 27905053 CGACGGCCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUUCCCUUGUCUCAUCGCAAGUACCAA-------AAGUCGUAAGACCUAUU-CUCUGUUUUUG- (((((((((((((((((((((....))))).)).)))))...))))).....(((((......)))))......-------..))))...........-...........- ( -22.10, z-score = -1.71, R) >droSim1.chr3R 11344727 103 - 27517382 CGACGGCCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUUCCCUUGUCUCAUCGCAAGUCCCAA-------AAGUCCUAAGACCUAUU-CUCUGUUUUUUG .((((((((((((((((((((....))))).)).)))))...))))).....(((((......)))))......-------..)))............-............ ( -20.20, z-score = -1.46, R) >droSec1.super_0 4373968 109 - 21120651 CGACGGCCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUUCCCUUGUCUCAUCGCAAGUCCCAAGUCCCAAAAGUCCUAAGACCUAUU-CUCCGUUUUUG- .((((((((((((((((((((....))))).)).)))))...))))).....(((((......)))))......)))......(((....))).....-...........- ( -21.20, z-score = -1.74, R) >droYak2.chr3R 9194445 108 + 28832112 CGACAGCCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUUCCCUUGUCUCAUCCCAAGUCCAAAGUCC--AAAGUCCUAAGACCCAUUUCCCUGUUUUUG- .(((((...(((((..(((((....)))))........((((.(((......((((........))))......))))--)))(((....))).)))))..)))))....- ( -16.30, z-score = -1.14, R) >droEre2.scaffold_4770 1287460 100 - 17746568 CGACAGUCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUCCCCUUGUCUCAUCCCAAGUCCUUA---------GUCCUUAGACCCAUU-CUCAGUUUUUG- .(((.((((((((((((((((....))))).)).)))))...))))......((((........))))......---------)))((.(((.....)-)).))......- ( -11.80, z-score = 0.23, R) >consensus CGACGGCCAAAAUGAAGCGAAAAUAUUUGCAUUCCGUUUUUGUGGCCAUUCCCUUGUCUCAUCGCAAGUCCCAA_______AAGUCCUAAGACCUAUU_CUCUGUUUUUG_ .((((((((((((((((((((....))))).)).)))))...))))).....((((........))))...............)))......................... (-16.16 = -16.40 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:32 2011