| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,805,285 – 6,805,405 |
| Length | 120 |
| Max. P | 0.970392 |
| Location | 6,805,285 – 6,805,405 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.32 |
| Shannon entropy | 0.48338 |
| G+C content | 0.42003 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -16.99 |
| Energy contribution | -17.22 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6805285 120 + 23011544 CUGCCCUUAUUUGCGUUUCAUCUUCGCUAAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGUCGCACAUACCUUUAUAACAAUAUUCCAAUAAUGUUUUAUUACUCUACAUUUGUUC .......(((.((((...((((((.((.............(((((....)))))))))))))...)))).)))....((.((((.(((....))).)))).))................. ( -15.51, z-score = 0.01, R) >droAna3.scaffold_12916 8391309 96 + 16180835 CAGCUAUAAUCUGGGUCUCGUCCUUGCUGAUCAUCAUUACGGAGCACUCGUUGCGCAGGAUGUGACGGACAUAUCUG-AAAGUAUUAUAUAUAUUUU----------------------- (((.(((..(((..(((.((((((.((......((......))(((.....))))))))))).)))))).))).)))-(((((((.....)))))))----------------------- ( -20.40, z-score = 0.33, R) >droEre2.scaffold_4929 15721705 90 + 26641161 CUGCUCUUAUUUGCGUUUCGUCCUCGCUGAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGGCGCACAUACCUUUAAACCAACAUAU------------------------------ .......(((.(((((..((((((.((((((....)))).(((((....)))))))))))))..))))).))).................------------------------------ ( -24.40, z-score = -2.48, R) >droYak2.chr2L 16221040 103 - 22324452 CUGCCCGUAUUUGCGUCUCGUCCUCGCUGAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGGCGCACAUACCUUUGUAAGAAAAUUCCUAUUCAUAUUUG----------------- ......((((.((((((.((((((.((((((....)))).(((((....))))))))))))).)))))).)))).............................----------------- ( -29.40, z-score = -2.77, R) >droSec1.super_3 2343910 120 + 7220098 CUGCCCUUAUCUGCGUUUCGUCCUCGCUGAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGUCGCACAUACCUUUAUAACAAUAUUCAAAUAAUGUUAUAUUACUAUACAUUUGUUU .......(((.((((...((((((.((((((....)))).(((((....)))))))))))))...)))).)))....(((((((.(((....))).)))))))................. ( -26.00, z-score = -2.46, R) >droSim1.chr2L 6606529 120 + 22036055 CUGCCCUUAUCUGAGUUUCGUCCUCGCUGAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGUCUCACAUACCUUUAUAACAAUAUUCAAAUAAUUUUCUAUUACUAUACAUUUGUUU .......(((.((((...((((((.((((((....)))).(((((....)))))))))))))...)))).))).......(((((........((((.....))))........))))). ( -20.79, z-score = -1.62, R) >consensus CUGCCCUUAUCUGCGUUUCGUCCUCGCUGAUCAUCAUCACGGAGCACUCGUUUCGCAGGAUGUGUCGCACAUACCUUUAUAACAAUAUUCAAAUAAU_UU_UA_________________ .......(((.((((...((((((.((((((....)))).(((((....)))))))))))))...)))).)))............................................... (-16.99 = -17.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:07 2011