| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,127,214 – 5,127,306 |
| Length | 92 |
| Max. P | 0.629472 |
| Location | 5,127,214 – 5,127,306 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.68 |
| Shannon entropy | 0.46377 |
| G+C content | 0.45170 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.88 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.37 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5127214 92 + 27905053 --AGAUA-AAAGGGGCAAAUGCUGAUGCGUUGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUCAAGAGCUGAGA---UUAAAAAUUCU--------------- --.....-...((.(((((((((.....((.(((...(((....)))))))).))))))))).))....(((((.....)))))---...........--------------- ( -25.50, z-score = -1.46, R) >droAna3.scaffold_13340 18787072 107 - 23697760 --AGACG-AAAAGGGCAAAUGUUGAUGAGUUUGCAAU--ACAAACGUGCCACAAGCACCGGUGUCG-AUUCUUAAGACUAAACAGCUCUAGAAAAAGAAUUCAAAAUUACACA --.((((-....((((((((........))))))...--.......(((.....)))))..))))(-((((((....(((........)))...)))))))............ ( -17.10, z-score = 0.49, R) >droEre2.scaffold_4770 1273321 92 - 17746568 UGUGGUAAC-GGGAGCAAGUGCUGAUGCGCUGGCAGA--GAGAACGUGCCACAAGCAUUUGUGCCACACUCUUAAGAAACGAGA---UUAAAAACCCC--------------- .........-(((.((.(((((....))))).)).((--(((...(((.(((((....))))).))).)))))...........---.......))).--------------- ( -25.80, z-score = -1.29, R) >droYak2.chr3R 9180824 91 + 28832112 --AGAUAACAGGGGGCAAAGGCUGAUGCGUUGGCAGA--GAGGACGUGCCACAAGCAUUUGUGCCACUUUCUCAAGCCCUAAGA---UUAGAAACCCC--------------- --........((((.....((((..(((....)))..--(((((.(((.(((((....))))).))).))))).))))(((...---.)))...))))--------------- ( -28.10, z-score = -1.19, R) >droSec1.super_0 4360671 93 - 21120651 --AGAUAGAAAGAGGUAAAUGCUGAUGCGUUGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUGAGA---UUAAAAAUGCC--------------- --....((((((.((((......(((((..((((...(((....)))))))...)))))..)))).))))))............---...........--------------- ( -21.90, z-score = -1.63, R) >droSim1.chr3R 11329089 92 - 27517382 --AGAUA-AAAGCGGCAAAUGCUGAUGCGUCGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUGAGA---UUAAAAAUUCC--------------- --.....-.....(((...((((((....))))))....(((((.(((.(((((....))))).))).)))))..).)).....---...........--------------- ( -20.20, z-score = -0.44, R) >consensus __AGAUA_AAAGGGGCAAAUGCUGAUGCGUUGGCAGA__GAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUGAGA___UUAAAAAUCCC_______________ ..............((.(((((....))))).)).....(((((.(((.((((......)))).))).)))))........................................ (-15.74 = -15.88 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:31 2011