| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,085,747 – 5,085,864 |
| Length | 117 |
| Max. P | 0.816183 |
| Location | 5,085,747 – 5,085,864 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.69 |
| Shannon entropy | 0.56452 |
| G+C content | 0.52873 |
| Mean single sequence MFE | -36.16 |
| Consensus MFE | -17.16 |
| Energy contribution | -18.47 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5085747 117 + 27905053 CAAAACCCGGAUGACUUAGCCAAUGGAUCGGCGACGAUCAUCGAGGCCAGGCCAAGAAAUGGUUUAGCUGCAUUGCGAGCGGAAAAGGCGCGAGCCGAGAUCAGUCAGUUCCAGAGU ........((((((((..((((((((((((....))))).....(((.((((((.....)))))).))).)))))...))......(((....)))......)))))..)))..... ( -37.80, z-score = -1.23, R) >droWil1.scaffold_181108 1618593 90 - 4707319 ------------------------AACUUUGAUGUAAGAACUGUACCAAAAUCCGG--GUCA-UUAGCUGCUUUAAAAGCAGACAAAGUCCGGGCGCAAAUUAGACAAUUUCAAAGU ------------------------.((((((((((..((..((..((......(((--(.(.-((..(((((.....)))))..)).)))))))..))..))..)))...))))))) ( -19.80, z-score = -1.29, R) >droAna3.scaffold_13340 9239784 114 - 23697760 GAAAAUCUGGAUGACGGGGUUCAAGAAGCAGCCAC---UAUUGUGGCCAGGCCCAAAAGCAAUUUAGCCUCCUUGCGAGCAGAGAAGGCACGGGCAGAAAUCAAACAGUUCCAGAGU .....((((((((...(..(((........(((((---....)))))...((((.(((....))).((((.(((.......))).))))..)))).)))..)...))..)))))).. ( -35.70, z-score = -1.50, R) >droSim1.chr3R 11292817 117 - 27517382 CAAAACCCGGAUGACUUGGCCAAUGGAUCGGCGACGAUCAUCGAGGCCAGGCCAAGAAAUGGCUUAGCUGCAUUGCGAGCAGAAAAGGUGCGAGCCGAGAUCAGUCAGUUCCAGAGU ........((((((((((((.....(((((....))))).(((..(((((((((.....))))))..((((.......))))....))).))))))))).)))......)))..... ( -39.50, z-score = -1.49, R) >droSec1.super_0 4324537 117 - 21120651 CAAAACCCGGAUGACUUGGCCAAUGGAUCGGCGACGAUCAUCGAGGCCAGGCCAAGAAAUGGCUUAGCUGCAUUGCGAGCAGAAAAGGUGCGAGCCGAGAUCAGUCAGUUCCAGAGU ........((((((((((((.....(((((....))))).(((..(((((((((.....))))))..((((.......))))....))).))))))))).)))......)))..... ( -39.50, z-score = -1.49, R) >droYak2.chr3R 9140983 117 + 28832112 CACAACCCGGAUGACAUGGCCAACGGAUCGGCCACGAUCAUCGAGGCCAGGCCCAGGAAUGGUUUAGCUGCAUUGCGAGCGGAAAAGGCGCGAGCGGAGAUCAGUCAGUUCCAGAGU ........(((((((.(((((........))))).((((....((((((..(....)..))))))..((((.(((((..(......).))))))))).)))).))))..)))..... ( -39.80, z-score = -0.93, R) >droEre2.scaffold_4770 1235864 117 - 17746568 CAUAACGUGGAUGACUUGGCCAACGGAUCGGCGACGAUCAUCGAGGCCAGGCCCAGAAGUGGUUUAGCUGCAUUGCGAGCGGAGAAGGCGCGAGCAGAGAUCAGUCAGUUCCAGAGU .......((((((.(((((((....(((((....))))).....)))))))..))((..(((((...((((.(((((..(......).))))))))).))))).))...)))).... ( -41.00, z-score = -1.58, R) >consensus CAAAACCCGGAUGACUUGGCCAAUGGAUCGGCGACGAUCAUCGAGGCCAGGCCCAGAAAUGGUUUAGCUGCAUUGCGAGCAGAAAAGGCGCGAGCCGAGAUCAGUCAGUUCCAGAGU ........(((((((..........(((((....))))).(((..((((((((.......)))))..((((.......))))....))).)))..........))))..)))..... (-17.16 = -18.47 + 1.32)
| Location | 5,085,747 – 5,085,864 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.69 |
| Shannon entropy | 0.56452 |
| G+C content | 0.52873 |
| Mean single sequence MFE | -34.23 |
| Consensus MFE | -15.96 |
| Energy contribution | -17.74 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5085747 117 - 27905053 ACUCUGGAACUGACUGAUCUCGGCUCGCGCCUUUUCCGCUCGCAAUGCAGCUAAACCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCUAAGUCAUCCGGGUUUUG ..((((((..((((((((((((((..(((.......)))..))......((((..(((.....)))..))))..))).))))...(((((....)))))..)))))))))))..... ( -35.90, z-score = -1.37, R) >droWil1.scaffold_181108 1618593 90 + 4707319 ACUUUGAAAUUGUCUAAUUUGCGCCCGGACUUUGUCUGCUUUUAAAGCAGCUAA-UGAC--CCGGAUUUUGGUACAGUUCUUACAUCAAAGUU------------------------ (((((((((((((((((.......((((...(((.(((((.....))))).)))-....--))))...)))).))))))......))))))).------------------------ ( -21.60, z-score = -1.80, R) >droAna3.scaffold_13340 9239784 114 + 23697760 ACUCUGGAACUGUUUGAUUUCUGCCCGUGCCUUCUCUGCUCGCAAGGAGGCUAAAUUGCUUUUGGGCCUGGCCACAAUA---GUGGCUGCUUCUUGAACCCCGUCAUCCAGAUUUUC ..((((((((.(((..(.....(((((.(((((((.((....)))))))))...........)))))..((((((....---)))))).....)..)))...))..))))))..... ( -36.10, z-score = -1.98, R) >droSim1.chr3R 11292817 117 + 27517382 ACUCUGGAACUGACUGAUCUCGGCUCGCACCUUUUCUGCUCGCAAUGCAGCUAAGCCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUG ..((((((..((((((((((((((..(((.......)))..))......((((.((((.....)))).))))..))).))))...(((((....)))))..)))))))))))..... ( -38.70, z-score = -1.96, R) >droSec1.super_0 4324537 117 + 21120651 ACUCUGGAACUGACUGAUCUCGGCUCGCACCUUUUCUGCUCGCAAUGCAGCUAAGCCAUUUCUUGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUG ..((((((..((((((((((((((..(((.......)))..))......((((.((((.....)))).))))..))).))))...(((((....)))))..)))))))))))..... ( -38.70, z-score = -1.96, R) >droYak2.chr3R 9140983 117 - 28832112 ACUCUGGAACUGACUGAUCUCCGCUCGCGCCUUUUCCGCUCGCAAUGCAGCUAAACCAUUCCUGGGCCUGGCCUCGAUGAUCGUGGCCGAUCCGUUGGCCAUGUCAUCCGGGUUGUG ..((((((..((((.((((((.((..(((.......)))..))......((((..(((....)))...))))...)).))))((((((((....))))))))))))))))))..... ( -37.20, z-score = -0.56, R) >droEre2.scaffold_4770 1235864 117 + 17746568 ACUCUGGAACUGACUGAUCUCUGCUCGCGCCUUCUCCGCUCGCAAUGCAGCUAAACCACUUCUGGGCCUGGCCUCGAUGAUCGUCGCCGAUCCGUUGGCCAAGUCAUCCACGUUAUG ....((((..(((((.......(((((((.......)))..((......))............)))).(((((.((..(((((....)))))))..))))))))))))))....... ( -31.40, z-score = -0.55, R) >consensus ACUCUGGAACUGACUGAUCUCGGCUCGCGCCUUUUCUGCUCGCAAUGCAGCUAAACCAUUUCUGGGCCUGGCCUCGAUGAUCGUCGCCGAUCCAUUGGCCAAGUCAUCCGGGUUUUG ..((((((..............((..(((.......)))..)).....................(((.(((((.....(((((....)))))....))))).))).))))))..... (-15.96 = -17.74 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:27 2011