| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,082,896 – 5,082,991 |
| Length | 95 |
| Max. P | 0.998857 |
| Location | 5,082,896 – 5,082,991 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 95.79 |
| Shannon entropy | 0.05800 |
| G+C content | 0.28070 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -25.69 |
| Energy contribution | -26.13 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.94 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.52 |
| SVM RNA-class probability | 0.998857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5082896 95 + 27905053 AAGGGUUAACUUUCAUAGCUUUGGAAGAUUAAACGAUACACAUAUAGAUAUUUGCUGGUUUCAAAAUUAAACCGGAAAAUGCCUAUUUAUGUUUA ..(..((((((((((......)))))).)))).).....((((((((.(((((.(((((((.......))))))).))))).)))..)))))... ( -18.60, z-score = -1.66, R) >droSim1.chr3R 11289896 95 - 27517382 AAGGGUUAACUUUCAUAGCUUUGGAAGAUUAAAAGAUACAUAUAUAGGUAUUUACUGGUUUUAAAAUUAAACCGGAAAAUGCCUAUUUAUGUUUA .....((((((((((......)))))).)))).....(((((.((((((((((.(((((((.......))))))).)))))))))).)))))... ( -29.40, z-score = -5.41, R) >droSec1.super_0 4321606 95 - 21120651 AAGGGUUAACUUUCAUAGCUUUGGAAGAUUAAAAGAUACAUAUAUAGGUAUUUACUGGUUUCAAAAUUAAGCCGGAAAAUGCCUAUUUAUGUUUA .....((((((((((......)))))).)))).....(((((.((((((((((.(((((((.......))))))).)))))))))).)))))... ( -28.60, z-score = -4.74, R) >consensus AAGGGUUAACUUUCAUAGCUUUGGAAGAUUAAAAGAUACAUAUAUAGGUAUUUACUGGUUUCAAAAUUAAACCGGAAAAUGCCUAUUUAUGUUUA .....((((((((((......)))))).)))).....(((((.((((((((((.(((((((.......))))))).)))))))))).)))))... (-25.69 = -26.13 + 0.45)
| Location | 5,082,896 – 5,082,991 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 95.79 |
| Shannon entropy | 0.05800 |
| G+C content | 0.28070 |
| Mean single sequence MFE | -14.43 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5082896 95 - 27905053 UAAACAUAAAUAGGCAUUUUCCGGUUUAAUUUUGAAACCAGCAAAUAUCUAUAUGUGUAUCGUUUAAUCUUCCAAAGCUAUGAAAGUUAACCCUU ...(((((.((((..((((.(.(((((.......))))).).))))..)))).))))).....((((..(((.........)))..))))..... ( -14.80, z-score = -1.44, R) >droSim1.chr3R 11289896 95 + 27517382 UAAACAUAAAUAGGCAUUUUCCGGUUUAAUUUUAAAACCAGUAAAUACCUAUAUAUGUAUCUUUUAAUCUUCCAAAGCUAUGAAAGUUAACCCUU ...(((((.(((((.((((.(.(((((.......))))).).)))).))))).))))).....((((..(((.........)))..))))..... ( -16.30, z-score = -2.74, R) >droSec1.super_0 4321606 95 + 21120651 UAAACAUAAAUAGGCAUUUUCCGGCUUAAUUUUGAAACCAGUAAAUACCUAUAUAUGUAUCUUUUAAUCUUCCAAAGCUAUGAAAGUUAACCCUU ...(((((.(((((.((((.(.((.((.......)).)).).)))).))))).))))).....((((..(((.........)))..))))..... ( -12.20, z-score = -0.79, R) >consensus UAAACAUAAAUAGGCAUUUUCCGGUUUAAUUUUGAAACCAGUAAAUACCUAUAUAUGUAUCUUUUAAUCUUCCAAAGCUAUGAAAGUUAACCCUU ...(((((.(((((.((((.(.(((((.......))))).).)))).))))).))))).....((((..(((.........)))..))))..... (-14.64 = -14.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:25 2011