Locus 9233

Sequence ID dm3.chr3R
Location 5,062,526 – 5,062,620
Length 94
Max. P 0.670181
window12655

overview

Window 5

Location 5,062,526 – 5,062,620
Length 94
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.49
Shannon entropy 0.09682
G+C content 0.32229
Mean single sequence MFE -20.04
Consensus MFE -17.04
Energy contribution -17.88
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.670181
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 5062526 94 + 27905053
CUUACACAUGCACUUAAAAAAGCCUUCUCGUUUGCAUUUCCAUUGAUUUGAUGGUGU----GUGUGCUUUCGUUAAAUACGAAAUUUAGAUUAUUUAA
....(((((((((......((((......)))).......((((.....))))))))----))))).((((((.....)))))).............. ( -17.20, z-score =  -1.12, R)
>droSim1.chr3R 11269143 98 - 27517382
CUUACACAUGCACUUAAAAAAGCCUUCUCGUUUGCAUUUCCAUUGAUUUGAUGGUGUAUGUGUGUGCUUUCGUUACAUACGAAAUUUAGAUUAUUUAA
..(((((((((((......((((......)))).......((((.....)))))))))))))))...((((((.....)))))).............. ( -20.80, z-score =  -1.88, R)
>droSec1.super_0 4300792 98 - 21120651
CUUACACAUGCACUUAAAAAAGCCUUCUCGUUUGCAUUUCCAUUGAUUUGAUGGUGUAUGUGUGUGCUUUCGUUACAUACGAAAUUUAGAUUAUUUAA
..(((((((((((......((((......)))).......((((.....)))))))))))))))...((((((.....)))))).............. ( -20.80, z-score =  -1.88, R)
>droEre2.scaffold_4770 1208497 98 - 17746568
CUUACACAUGCACUUAAAAAAGCCUUUUCGAUUGCAUUUCCUUUGAUUUGAUGGUGUGUGUGUGUGCUUUCGUUAAAUACGAAAUUUAGAUUAUUUAA
..(((((((((((........(((...((((...((.......))..)))).)))))))))))))).((((((.....)))))).............. ( -21.70, z-score =  -2.37, R)
>droYak2.chr3R 9114514 96 + 28832112
CUUACACAUGCACUUAAAAAAGCCUUUUCGUUUGCAUUUCCUUCGAUUUGAUGGUGUGUGUGUG--CUUUCGUUAAAUACGAAAUUUAGAUUAUUUAA
..((((((((((((.....((((......)))).((..((....))..))..))))))))))))--.((((((.....)))))).............. ( -19.70, z-score =  -1.84, R)
>consensus
CUUACACAUGCACUUAAAAAAGCCUUCUCGUUUGCAUUUCCAUUGAUUUGAUGGUGUAUGUGUGUGCUUUCGUUAAAUACGAAAUUUAGAUUAUUUAA
..((((((((((((.....((((......)))).((..((....))..))..))))))))))))...((((((.....)))))).............. (-17.04 = -17.88 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:24 2011