| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,061,392 – 5,061,443 |
| Length | 51 |
| Max. P | 0.915003 |
| Location | 5,061,392 – 5,061,443 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 54.82 |
| Shannon entropy | 0.67097 |
| G+C content | 0.33056 |
| Mean single sequence MFE | -11.20 |
| Consensus MFE | -2.67 |
| Energy contribution | -2.18 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.71 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5061392 51 + 27905053 CUUGUUUAACA-UCUAAGAAUUUAUACAUAUCUGGAAAACUUGUGAACAGAA----- .(((((((.((-((((.((...........)))))).....)))))))))..----- ( -3.90, z-score = 0.66, R) >droSim1.chr3R 11267998 52 - 27517382 UUUGUUUAACAAUCUCUGAAUUUAUACAUAUCUGGAAAACUUGUGGACAGAA----- ((((((((.(((..(((..((........))..)))....))))))))))).----- ( -6.30, z-score = -0.18, R) >dp4.chr2 6557036 54 - 30794189 --UGCUUUUCG-UGCAGAUACUCAUACACAUACAGGGUAUCAAAAGCGAAAAGACAA --(((((((((-(...(((((((...........)))))))....)))))))).)). ( -17.30, z-score = -5.36, R) >droPer1.super_3 369463 54 - 7375914 --UGCUUUUCG-UGCAGAUACUCAUAAACAUACAGGGUAUCAAAAGCGAAAAGACAA --(((((((((-(...(((((((...........)))))))....)))))))).)). ( -17.30, z-score = -5.43, R) >consensus __UGCUUAACA_UCCAGAAACUCAUACACAUACAGAAAACCAAAAGACAAAA_____ ................(((((((...........)))))))................ ( -2.67 = -2.18 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:23 2011