| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,031,251 – 5,031,345 |
| Length | 94 |
| Max. P | 0.604625 |
| Location | 5,031,251 – 5,031,345 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 51.70 |
| Shannon entropy | 0.99040 |
| G+C content | 0.36987 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -2.49 |
| Energy contribution | -2.65 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.14 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5031251 94 + 27905053 AAUAGCUU-AA-CGCUAUAAAAUC-------AUCGAACUU---UGACUUUUUUCGCACGACAGAGGAGUUGAAACAAAA----AAAAAAAAGUAGGAAAAACCAAUAAAG .(((((..-..-.)))))......-------.......((---..((((((((........))))))))..))......----...........((.....))....... ( -12.20, z-score = -0.71, R) >droSim1.chr3R 11236740 88 - 27517382 AAUAGCUU-AA-CGCUAUAAAAUC-------AUCGAACUU---UGACUUUUUUCGCACGACAGAGGAGUUGAAAUAAAAAAGUGGGAAAAACCAAUAAAG---------- .(((((..-..-.)))))......-------......(((---((((((((((....((((......))))....))))))))((......))..)))))---------- ( -15.00, z-score = -1.51, R) >droSec1.super_0 4269604 88 - 21120651 AAUAGCUU-AA-CGCUAUAAAAUC-------AACAAACUU---UGACUCUUUUCGCACGACAGAGUAGUUGAAAUAAAAAAGUGGGAAAAACCAAUAAAG---------- .(((((..-..-.)))))....((-------(((..((((---((...............)))))).)))))..........(((......)))......---------- ( -14.56, z-score = -1.85, R) >droYak2.chr3R 9082247 82 + 28832112 AAUAGCUU-AA-CGCUAUAAAAUC-------AUCAAACUU---UGACUCUUUUCGCACGACAGAGGAGUUGAA-UAAAAAAG-----GAAACCAAUAAAG---------- .(((((..-..-.)))))......-------.......((---..((((((((........))))))))..))-.......(-----....)........---------- ( -14.80, z-score = -2.47, R) >droEre2.scaffold_4770 1176337 81 - 17746568 AAUAGCUU-AA-CGCUAUAAAAUC-------AUCAAACUU---UGACUUUUUUCGCACGACA--GGAGUUGGAA-AAAA----GGGGAAAUCCAAUAAAG---------- .(((((..-..-.)))))......-------......(((---((.((((((((...((((.--...)))))))-))))----).((....))..)))))---------- ( -15.50, z-score = -2.05, R) >droAna3.scaffold_13340 9192169 88 - 23697760 AAUAGCUC-AAACGCUAUAAAGGUUGGAAGAAGGAAACUU---UGACUUUUUUCACACGACA-----CCCGAAAUCGAAA---CAGAGAAGCCAAUAAAU---------- .(((((..-....)))))....(((((..((((....)))---)..(((((((....(((..-----.......)))...---.))))))))))))....---------- ( -17.20, z-score = -2.33, R) >dp4.chr2 6513517 91 - 30794189 AAUAGCUU-AA-CGCUAUAAAGCC-------AUCAAACUU---UGACUCCUUUCACACGGCC-----ACCGAAAGGGGGUUGGCGGAGGGGGGCAUGGGGAGGGCAGG-- .(((((..-..-.)))))...(((-------.((...((.---((.((((((((...(((((-----.((....)).)))))...)))))))))).)).)).)))...-- ( -38.60, z-score = -4.50, R) >droPer1.super_3 324997 90 - 7375914 AAUAGCUU-AA-CGCUAUAAAGCC-------AUCAAACUU---UGACUCCUUUCACACGGCC-----ACCGAAAGGGGGC-GGCAGAUGGGGGGUUGGGGAGGGCAGG-- .(((((..-..-.)))))...(((-------......(((---..(((((((((...((.((-----.((....)))).)-)...)).)))))))..)))..)))...-- ( -35.30, z-score = -3.46, R) >droWil1.scaffold_181130 8407916 76 - 16660200 AAUAGUCUUGG-AGCUAAAUAAAA---ACAAAUAUAGUGUA--UAUUCAAUAUCACACGAUAUGCCGUGAAAACCAAUAAAG---------------------------- .......((((-.((((.((....---....)).))))...--............((((......))))....)))).....---------------------------- ( -8.60, z-score = -0.78, R) >droVir3.scaffold_12855 8749556 95 + 10161210 ---AGUUCCAAUUGCUUACAAACUUAUUAACAUAGUGUUCA--UGCCCUAACCGAGCUGGCGUAUACACACAACAGAACAAUUAAGAAGGCUAAAUAAAU---------- ---.((((...(((....))).............((((..(--((((((.....))..)))))..))))......)))).....................---------- ( -13.20, z-score = 0.01, R) >droGri2.scaffold_14906 4016499 97 + 14172833 AACAGUUU-GU-CGCUAUGCCACC-------AGCACUUUUAUUCAAUUUUCUAUAAACGACACAGGAAGCGAAGAAAAAAAUAGAAAGUAGAAAAUAAAAAUAAAA---- ....(((.-((-.((...)).)).-------)))..((((((((.(((((((((..........(....)..........))))))))).))..))))))......---- ( -10.85, z-score = -0.15, R) >consensus AAUAGCUU_AA_CGCUAUAAAAUC_______AUCAAACUU___UGACUUUUUUCACACGACA_AGGAGUUGAAAUAAAAAAG_GAGAAAAACCAAUAAAG__________ .(((((.......)))))............................................................................................ ( -2.49 = -2.65 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:20 2011