| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,012,540 – 5,012,652 |
| Length | 112 |
| Max. P | 0.883203 |
| Location | 5,012,540 – 5,012,652 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.15578 |
| G+C content | 0.27044 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -17.79 |
| Energy contribution | -18.13 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5012540 112 + 27905053 UUGGCCGGUCAGUAGUUCAAAUAUUUCUACAUACGGUUCUAUUAUGAAAUAUCUAAUUUUGUUUUUUGAUUUUUGAAUGUUUCGAAAAGAAAACAUAGAAAAUCAAUCAAUA ..(((((....((((...........))))...))))).....................((((..(((((((((..(((((((.....).)))))).)))))))))..)))) ( -19.10, z-score = -0.95, R) >droSec1.super_0 4251140 105 - 21120651 -----CGGCCAGAAGUUCGAAUAUUUCUAAAUACAGUUCUAUUAGGAAAUAUGUAACUUU--UUGUUGAUUUUUGAAUGUUUCGAAAAGGAAGCAUAGAAAAUCAAUCAAUA -----.(((.(((((((...((((((((.((((......)))).))))))))..))))))--).)))(((((((..(((((((......))))))).)))))))........ ( -26.50, z-score = -3.59, R) >droSim1.chr3R 11218016 105 - 27517382 -----CGGCCAGAAGUUCAAAUAUUUCUAAAUACAGUUCUGUUAUGAAAUAUCUAAUUUU--UUGUUGAUUUUUGAAUGUUUCGAAAAGGAAGCAUAGAAAAUCAAUCAAUA -----....((((((.....(((((((.....(((....)))...))))))).....)))--)))(((((((((..(((((((......))))))).)))))))))...... ( -22.30, z-score = -2.35, R) >consensus _____CGGCCAGAAGUUCAAAUAUUUCUAAAUACAGUUCUAUUAUGAAAUAUCUAAUUUU__UUGUUGAUUUUUGAAUGUUUCGAAAAGGAAGCAUAGAAAAUCAAUCAAUA ...........((((((...(((((((..((((......))))..)))))))..)))))).....(((((((((..(((((((......))))))).)))))))))...... (-17.79 = -18.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:15 2011