| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,011,141 – 5,011,211 |
| Length | 70 |
| Max. P | 0.893510 |
| Location | 5,011,141 – 5,011,211 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Shannon entropy | 0.29704 |
| G+C content | 0.42811 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -13.62 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5011141 70 + 27905053 UUUCGCAGGCGUGGCUUUUUUCGGUCCACGCUGGCAAAAUGGGAAUAAGUGUGAAAAUAUUUGCAAAAAU ....((.(((((((((......)).))))))).))..........(((((((....)))))))....... ( -20.10, z-score = -2.05, R) >droEre2.scaffold_4770 1156339 62 - 17746568 UUUCGCAGGCGUCGCCUUUUUCGGGAAAUUCUCGCAGAAUGUGG--------AAAAAUAUUUGCAAAAAU ((((((((((...)))((((.((((.....)))).)))))))))--------))................ ( -12.80, z-score = -0.25, R) >droYak2.chr3R 9059346 62 + 28832112 UUUCGCAGGCGUGGCUUUUUUCGGCCAACGCUGGCAGAAUGUAA--------GAAAACAUUUGCAAAACU ....((.(((((((((......)))).))))).)).((((((..--------....))))))........ ( -19.40, z-score = -1.96, R) >droSec1.super_0 4249788 70 - 21120651 UUUCGCAGGCGUGGCUUUUUUCGGGCCACGCUGGCAAAAUGGGAAUAAGUGGGAAAAUAUUUGCAAAAAU ....((.((((((((((.....)))))))))).))....((.(((((..(....)..))))).))..... ( -22.90, z-score = -2.94, R) >droSim1.chr3R 11216246 70 - 27517382 UUUCGCAGGCGUGGCUUUUUUCGGGCCACGCUGGCAAAAUGGGAAUAAGUGGAAAAAUAUUUGCAAAAAU ....((.((((((((((.....)))))))))).))....((.(((((..(....)..))))).))..... ( -24.40, z-score = -3.58, R) >consensus UUUCGCAGGCGUGGCUUUUUUCGGGCCACGCUGGCAAAAUGGGAAUAAGUG_GAAAAUAUUUGCAAAAAU ....((.((((((((((.....)))))))))).))................................... (-13.62 = -14.50 + 0.88)
| Location | 5,011,141 – 5,011,211 |
|---|---|
| Length | 70 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 82.51 |
| Shannon entropy | 0.29704 |
| G+C content | 0.42811 |
| Mean single sequence MFE | -15.64 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.70 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5011141 70 - 27905053 AUUUUUGCAAAUAUUUUCACACUUAUUCCCAUUUUGCCAGCGUGGACCGAAAAAAGCCACGCCUGCGAAA ...............................((((((..((((((.(........)))))))..)))))) ( -14.90, z-score = -2.09, R) >droEre2.scaffold_4770 1156339 62 + 17746568 AUUUUUGCAAAUAUUUUU--------CCACAUUCUGCGAGAAUUUCCCGAAAAAGGCGACGCCUGCGAAA ..(((((((....(((((--------(...((((.....)))).....))))))(((...)))))))))) ( -11.00, z-score = -0.47, R) >droYak2.chr3R 9059346 62 - 28832112 AGUUUUGCAAAUGUUUUC--------UUACAUUCUGCCAGCGUUGGCCGAAAAAAGCCACGCCUGCGAAA ..((((((((((((....--------..)))))......((((.(((........))))))).))))))) ( -16.50, z-score = -1.40, R) >droSec1.super_0 4249788 70 + 21120651 AUUUUUGCAAAUAUUUUCCCACUUAUUCCCAUUUUGCCAGCGUGGCCCGAAAAAAGCCACGCCUGCGAAA ...............................((((((..(((((((.........)))))))..)))))) ( -17.90, z-score = -3.26, R) >droSim1.chr3R 11216246 70 + 27517382 AUUUUUGCAAAUAUUUUUCCACUUAUUCCCAUUUUGCCAGCGUGGCCCGAAAAAAGCCACGCCUGCGAAA ...............................((((((..(((((((.........)))))))..)))))) ( -17.90, z-score = -3.13, R) >consensus AUUUUUGCAAAUAUUUUC_CACUUAUUCCCAUUUUGCCAGCGUGGCCCGAAAAAAGCCACGCCUGCGAAA ...............................((((((..(((((((.........)))))))..)))))) (-10.34 = -11.70 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:14 2011