| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,995,465 – 4,995,555 |
| Length | 90 |
| Max. P | 0.835936 |
| Location | 4,995,465 – 4,995,555 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 62.28 |
| Shannon entropy | 0.63668 |
| G+C content | 0.54805 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.16 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4995465 90 + 27905053 AGAAGGACAGGGAUAUGGCCAUGAGCGCUUGGCCAACGUUGUUCCAUCAACUCAUCGUCAGCCAGCAUCC---UUCGACUGCUCCUUGGUCCU------------ ...((((((((((..((((((........))))))..((((......)))).............(((((.---...)).)))))))).)))))------------ ( -26.70, z-score = -0.37, R) >droAna3.scaffold_13340 9152304 80 - 23697760 ---CGGACAAGGACAUGGCCAUGAGCGGAUGGCUAACGUUGUUUCAUCAACUC--------CCAGCGUCC---UUCGGUUGUUCCUUGGUCCUG----------- ---.(((((((((.(..(((..(((.(((((.((...((((......))))..--------..)))))))---))))))..)))))).))))..----------- ( -28.40, z-score = -1.90, R) >droSec1.super_0 4234073 95 - 21120651 AGAAGGACAGGGAUAUGGCCAUGAGCGCUUGGCCAACGUUGCUCCAUCAACUCAUCGCCAGCCAGCAUCC---UUCGACUGCUCCUUGGUACUGCUCA------- ....(..(((.(((.((((((........))))))..((((......))))..)))(((((..((((((.---...)).))))..))))).)))..).------- ( -27.10, z-score = 0.30, R) >droSim1.chr3R 11200535 95 - 27517382 AGAAGGACAGGGAUAUGGCCAUGAGCGCUUGGCCAACGUUGCUCCAUCAACUCAUCGCCAGCCAGCAUCC---UUCGACUGCUCCUUGGUACUGCUCA------- ....(..(((.(((.((((((........))))))..((((......))))..)))(((((..((((((.---...)).))))..))))).)))..).------- ( -27.10, z-score = 0.30, R) >droMoj3.scaffold_6540 23883333 100 + 34148556 AACCCCACUCGUGCAUUGCCUUAUUGCCCCUGCCUGCGCUUAUUUGUUGACCAA-----AUUCAAUGCCCAAGCCAGGCUAUUGCCUGGCGGCAAAUGAGACGCA ..........(.(((..((......))...)))).(((((((((((((((....-----..)))))(((...(((((((....))))))))))))))))).))). ( -33.80, z-score = -3.21, R) >consensus AGAAGGACAGGGAUAUGGCCAUGAGCGCUUGGCCAACGUUGCUCCAUCAACUCAUCG_CAGCCAGCAUCC___UUCGACUGCUCCUUGGUACUG___________ ....(((((((((..((((((........))))))..((((......)))).............(((((.......)).)))))))).))))............. (-14.68 = -14.16 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:09 2011