Locus 922

Sequence ID dm3.chr2L
Location 6,784,601 – 6,784,691
Length 90
Max. P 0.550767
window1249

overview

Window 9

Location 6,784,601 – 6,784,691
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.22
Shannon entropy 0.10543
G+C content 0.41426
Mean single sequence MFE -21.96
Consensus MFE -21.22
Energy contribution -20.42
Covariance contribution -0.80
Combinations/Pair 1.19
Mean z-score -0.88
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.12
SVM RNA-class probability 0.550767
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 6784601 90 - 23011544
AAACGCUGAUUUUGAUUUACGAUCGCCAUCCGAUUAAUUCCGAUUUCAAAUGAAGGCAAAGCAUUGGACGGUUGGCUAAGCUUUGCUUUC
......(((..(((......(((((.....))))).....)))..)))...(((((((((((.((((........))))))))))))))) ( -22.30, z-score =  -1.17, R)
>droEre2.scaffold_4929 15701183 89 - 26641161
-AAAACUGAGUUUGAUCUACGAUCGCCAUCCGAUUAAUUCUGAUUUUAAAUGGAGGCGAAGCAUUGGACGGUUGGCUAAGCUUUGCUUUC
-..((((..(((..((((....(((((.((((.((((........)))).))))))))))).))..)))))))(((........)))... ( -21.50, z-score =  -0.86, R)
>droYak2.chr2L 16200234 90 + 22324452
AAAUGCUGAAUUUGCUUUACGAUCGCCAUCCGAUUAAUUCCGAUUUCAAAUGAAGGCGAAGCAUUGGACGGUUGGCUAGGCUUUGCUUUC
......((((.(((......(((((.....))))).....))).))))...(((((((((((.((((........))))))))))))))) ( -22.00, z-score =  -0.38, R)
>droSec1.super_3 2323342 90 - 7220098
AAAAACUGAUUUUGAUUUACGAUCGCCAUCCGAUUAAUUCCGAUUUCAAAUGAAGGCGAAGCAUUGGACGGUUGGCUAAGCUUUGCUUUC
......(((..(((......(((((.....))))).....)))..)))...(((((((((((.((((........))))))))))))))) ( -22.00, z-score =  -1.26, R)
>droSim1.chr2L 6585851 90 - 22036055
AAAAGCUGAUUUUGAUUUACGAUCGCCAUCCGAUUAAUUCCGAUUUCAAAUGAAGGCGAAGCAUUGGACGGUUGGCUAAGCUUUGCUUUC
......(((..(((......(((((.....))))).....)))..)))...(((((((((((.((((........))))))))))))))) ( -22.00, z-score =  -0.75, R)
>consensus
AAAAGCUGAUUUUGAUUUACGAUCGCCAUCCGAUUAAUUCCGAUUUCAAAUGAAGGCGAAGCAUUGGACGGUUGGCUAAGCUUUGCUUUC
......(((..(((......(((((.....))))).....)))..)))...(((((((((((.((((........))))))))))))))) (-21.22 = -20.42 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:04 2011