| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,974,587 – 4,974,646 |
| Length | 59 |
| Max. P | 0.953140 |
| Location | 4,974,587 – 4,974,646 |
|---|---|
| Length | 59 |
| Sequences | 7 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 71.14 |
| Shannon entropy | 0.56638 |
| G+C content | 0.41436 |
| Mean single sequence MFE | -11.91 |
| Consensus MFE | -5.33 |
| Energy contribution | -6.07 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4974587 59 - 27905053 GGACACAAGUUGUCGACCCAAUUAUGAGAAUAAUAACGACGACAGCCACAAGAGUUCAA--- ((((.(..(((((((.....(((((....))))).....))))))).....).))))..--- ( -11.80, z-score = -2.65, R) >droSim1.chr3R 11177783 59 + 27517382 GGACACAAGUUGUCGACCCAAUUAUGAGAAUAAUAAUGACGACAGCCACAAGAGUUCAA--- ((((.(..(((((((.....(((((....))))).....))))))).....).))))..--- ( -11.80, z-score = -2.48, R) >droSec1.super_0 4213421 59 + 21120651 GGACACAAGUUGUCGACCCAAUUAUGAGAAUAAUAAUGACGACAGCCACAAGAGUUCAA--- ((((.(..(((((((.....(((((....))))).....))))))).....).))))..--- ( -11.80, z-score = -2.48, R) >droYak2.chr3R 9022042 57 - 28832112 --GGACAACUUGUCGACCCAAUUAUGAGAAUAAUAAUGACGACAGCGACAAGAGUUCAA--- --((((..(((((((.....(((((.......)))))........))))))).))))..--- ( -13.42, z-score = -3.27, R) >droEre2.scaffold_4770 1119097 57 + 17746568 --GGACAAGUUGUCGACCCAAUUAUGAGAAUAAUAAUGACUACAGCCACAAGAGUUCAA--- --((((..(((((.......(((((....))))).......)))))(....).))))..--- ( -5.64, z-score = 0.31, R) >droMoj3.scaffold_6540 23857131 60 - 34148556 --UAAUCAGCACUCGACCUCAUUAUGCUAAAUGAUGAGACGACUGUCAACUGCAGUCGCUGA --...(((((.......((((((((.....))))))))..((((((.....))))))))))) ( -23.20, z-score = -5.02, R) >anoGam1.chr2R 47958155 59 - 62725911 GAAAACCGUUUGUUUACCUAAUGAUGAGAAUGAUCCAAGCUGCAGUCCAAGGGGUACAA--- ..............(((((..((.((((..((...))..)).))...))..)))))...--- ( -5.70, z-score = 1.84, R) >consensus G_ACACAAGUUGUCGACCCAAUUAUGAGAAUAAUAAUGACGACAGCCACAAGAGUUCAA___ ........(((((((.....(((((....))))).....)))))))................ ( -5.33 = -6.07 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:06 2011