| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,973,650 – 4,973,748 |
| Length | 98 |
| Max. P | 0.888665 |
| Location | 4,973,650 – 4,973,748 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 72.74 |
| Shannon entropy | 0.48678 |
| G+C content | 0.48280 |
| Mean single sequence MFE | -15.16 |
| Consensus MFE | -10.64 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4973650 98 - 27905053 CACACCCGUAGACUCGAAAGAGCACACACAUACAGAGACACACACAGAAGACGACGCCGCCUCGGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU ..((((.((.(.(((....)))))).....................((.(.((....))).))))))...(((((...((....)).)))))...... ( -17.90, z-score = -1.72, R) >droAna3.scaffold_13340 9131858 95 + 23697760 CAAACUUACACACACACAUAGAGACAGGCACUGAGA---UACUGGAGACGAUGACGCCGCUUCAGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU ...................((((.............---((((((((.((.......))))))))))...(((((...((....)).)))))..)))) ( -15.90, z-score = -0.90, R) >droEre2.scaffold_4770 1118152 94 + 17746568 CACACCCACACCCUCGCAGGAGCACACACAUACUGAG----ACACAGGAGACGACGCCGCCUUGGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU .....((((....((.(((.............))).)----)..((((.(.((....)))))))))))..(((((...((....)).)))))...... ( -17.22, z-score = -0.29, R) >droSec1.super_0 4212514 74 + 21120651 ----------------------CACACACAUACAGAG--ACACACAGGAGACGACGCCGCCUCGGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU ----------------------...........((((--...(((..(((.((....)).))).)))...(((((...((....)).)))))..)))) ( -13.20, z-score = -1.54, R) >droSim1.chr3R 11176867 78 + 27517382 ------------------CACACACACACAUACAGAG--ACACACAGAAGACGACGCCGCCUCGGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU ------------------...................--.......((((......((((....))))..(((((...((....)).)))))..)))) ( -11.60, z-score = -1.42, R) >consensus CA_AC____A__C_C__A_AAACACACACAUACAGAG__ACACACAGAAGACGACGCCGCCUCGGUGGAAAUAAAAAGCCGCAAGGAUUUAUCACUUU ..............................................((((......((((....))))..(((((...((....)).)))))..)))) (-10.64 = -10.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:05 2011