| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,973,441 – 4,973,549 |
| Length | 108 |
| Max. P | 0.882334 |
| Location | 4,973,441 – 4,973,549 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 86.29 |
| Shannon entropy | 0.24357 |
| G+C content | 0.50154 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -20.88 |
| Energy contribution | -20.80 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4973441 108 - 27905053 UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCGACCU----------------CAACAUACCGACUCACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUCGAGAGCA ...((((...))))......((((((.....((((.----------------.........((.(((.....))).))..(((((((((......)))))))))........)))).)))))). ( -28.70, z-score = -2.66, R) >droAna3.scaffold_13340 9131644 116 + 23697760 ------UCUCAUGCUAACAAGCUCCCCCUGUAACCUCAGCUUCCCAGUGUCCCAGCAUCCAGACUCACUAACUGACUCUUGUGGUUGGCUGGCAUGCAAGUUACUUACCUUUUCCAGUGAAG-- ------..(((((((....))).......(((((....((...((((....(((((....(((.(((.....))).)))....)))))))))...))..)))))............))))..-- ( -23.10, z-score = 0.54, R) >droEre2.scaffold_4770 1117934 108 + 17746568 UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCAACCU----------------CAACAUCCCGACACACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUCGAGAGCA ...((((...))))......((((((.........(----------------(........))......(((..(.....(((((((((......)))))))))......)..))).)))))). ( -25.70, z-score = -1.89, R) >droYak2.chr3R 9020849 108 - 28832112 UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCAACCU----------------CAACAUCCCGACUCACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUUGAGAGCA ...((.(((((.(((((...................----------------.........((.(((.....))).))..(((((((((......)))))))))......))))).))))))). ( -29.30, z-score = -3.18, R) >droSec1.super_0 4212311 108 + 21120651 UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCGACCU----------------CAACAUCCCGACUCACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUCGAGAGCA ...((((...))))......((((((.....((((.----------------.........((.(((.....))).))..(((((((((......)))))))))........)))).)))))). ( -28.70, z-score = -2.62, R) >droSim1.chr3R 11176652 108 + 27517382 UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCGACCU----------------CAACAUCCCGACUCACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUCGAGAGCA ...((((...))))......((((((.....((((.----------------.........((.(((.....))).))..(((((((((......)))))))))........)))).)))))). ( -28.70, z-score = -2.62, R) >consensus UCCGCAUCUCAUGCUAACAAGUUCUCCCCUCAACCU________________CAACAUCCCGACUCACUAACUGACUCUUGUGGCUGGCUUGCAUGCCAGUUACUUACCUUUGGUUCGAGAGCA ....................((((((...((((............................((.(((.....))).))..(((((((((......)))))))))......))))...)))))). (-20.88 = -20.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:04 2011