| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,967,082 – 4,967,133 |
| Length | 51 |
| Max. P | 0.608657 |
| Location | 4,967,082 – 4,967,133 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 99.22 |
| Shannon entropy | 0.01416 |
| G+C content | 0.32941 |
| Mean single sequence MFE | -8.78 |
| Consensus MFE | -8.84 |
| Energy contribution | -8.68 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.85 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4967082 51 + 27905053 GUGAGCAAUGGUUGCGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((.((((((((.....))))))..))....)))).))......... ( -9.20, z-score = -1.01, R) >droSim1.chr3R 11169571 51 - 27517382 GUGAGCAAUGGUUGCGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((.((((((((.....))))))..))....)))).))......... ( -9.20, z-score = -1.01, R) >droSec1.super_0 4206075 51 - 21120651 GUGAGCAAUGGUUGCGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((.((((((((.....))))))..))....)))).))......... ( -9.20, z-score = -1.01, R) >droYak2.chr3R 9014430 51 + 28832112 GUGAGCAAUGGUUGCGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((.((((((((.....))))))..))....)))).))......... ( -9.20, z-score = -1.01, R) >droEre2.scaffold_4770 1111631 51 - 17746568 GUGAGCAAUGGUUGUGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((...(((...((((......)))).))).)))).))......... ( -7.10, z-score = -0.17, R) >consensus GUGAGCAAUGGUUGCGGAAAAUGCAAUUUCAGAUAUGUUGACAAAUAAAUA ((.((((.((((((((.....))))))..))....)))).))......... ( -8.84 = -8.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:00:01 2011