| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,942,801 – 4,942,907 |
| Length | 106 |
| Max. P | 0.519794 |
| Location | 4,942,801 – 4,942,907 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 88.91 |
| Shannon entropy | 0.19453 |
| G+C content | 0.36161 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.74 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4942801 106 - 27905053 UGUUA-UUUUGUGCUUUUUAAUUAGCGAAUUAAACCGUUUAAUUUAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCUCCGCCAGGAUUUUUCUGUUAAUCCCUCA .(.((-..(..(((.....((((((((........)).))))))......)))..)..)).)(((((((((((........)))))))))))............... ( -21.10, z-score = -2.24, R) >droSim1.chr3R 11144922 106 + 27517382 AGUUA-UUUGAGGCUUUUUAAUUAGCGAAUUAAAGCGUUAAAUCUAAUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCUCGCCAGGAUUUUCCUGUUAAUCCCUCA .....-..(((((...........((((((((............)))))))).((((.....(((((((((((........)))))))))))...))))...))))) ( -26.90, z-score = -2.86, R) >droSec1.super_0 4182280 106 + 21120651 AGUUA-UUUGAGGCUUUUUAAUUAGCGAAUUAAAGCGUUAAAUCUAUUUUGCGCGGCUUACCAAAAUCCUGCUUAAUCCCCGCCAGGAUUUUCCUGUUAAUUCCUCA .....-..(((((((........)))(((((((.((((.(((....))).))))((....))((((((((((.........).)))))))))....))))))))))) ( -23.80, z-score = -1.82, R) >droYak2.chr3R 8990003 106 - 28832112 AGUUA-UUUGAGGCUUUUUAAUUAGCAAAUUAAACCGUUUAAUCCAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCCCGCCAGGAUUUCCCAGUUAAUCCAUCA .....-..(((((....((((((.(((((..................))))).(((....)))((((((((((........))))))))))...)))))).)).))) ( -20.67, z-score = -1.48, R) >droEre2.scaffold_4770 1087373 107 + 17746568 AGUUAUUUUGAGGCUCUUUAAUUAGCAAAUUUAAACGUUUAAUCCAUUUUGCGUAGCUUACCGAAAUCCUGGUUAAUCCCCGCCAGAAUUUUCAAGUUAAUCCAUCA ........(((((...........(((((..................))))).((((((...(((((.(((((........))))).))))).))))))..)).))) ( -16.27, z-score = -0.92, R) >consensus AGUUA_UUUGAGGCUUUUUAAUUAGCGAAUUAAACCGUUUAAUCUAUUUUGCGUGGCUUACCAAAAUCCUGGUUAAUCCCCGCCAGGAUUUUCCUGUUAAUCCCUCA ..........(((((.(((((((....)))))))((((............)))))))))...(((((((((((........)))))))))))............... (-15.94 = -16.74 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:59 2011