| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,938,048 – 4,938,145 |
| Length | 97 |
| Max. P | 0.851217 |
| Location | 4,938,048 – 4,938,145 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 68.50 |
| Shannon entropy | 0.62864 |
| G+C content | 0.35205 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -11.66 |
| Energy contribution | -12.07 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4938048 97 - 27905053 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAGUUCCGAAUUGCGAAUGGC----AAAGGAACGAAUUUUAAGUACUCUUU------------------ --...(((((((((..((.((............)).))..))))))))).....(((((...((((.....))----)).)))))..................------------------ ( -23.80, z-score = -1.93, R) >droSim1.chr3R 11140190 99 + 27517382 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAGUUCCAAAUUGCGAAU--CGCAAAAAAAAACGAAUUUUAAGUACUCUAU------------------ --((((.....(((((((((.((((...((((((....))))))))))))))))))).....(((((...--)))))....................))))..------------------ ( -19.60, z-score = -1.62, R) >droSec1.super_0 4177531 101 + 21120651 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAGUUCCAAAUUGCGAAUGGCACAAAAAAAAACGAAUUUUAAGUACUCUUU------------------ --((((.....(((((((((.((((...((((((....)))))))))))))))))))......(((.....))).......................))))..------------------ ( -17.00, z-score = -0.19, R) >droYak2.chr3R 8985261 100 - 28832112 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAGUUCCGAGUUGCGACUG-CGACAAACACGACGAAAUUUACGUACUCUUU------------------ --((((.....(((((((((.((((...((((((....)))))))))))))))))))....(((((....)-)))).....................))))..------------------ ( -21.00, z-score = -0.68, R) >droEre2.scaffold_4770 1082701 98 + 17746568 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCGUCAAGUUCCGAAUUGCGACUG---CGUAAAGAAACGAAUUUUACGUACUCUUU------------------ --..(((.....((((((((.((((...((((((....))))))))))))))))))))).......((.((---(((((((.......))))))))).))...------------------ ( -21.80, z-score = -1.07, R) >droAna3.scaffold_13340 9095962 93 + 23697760 AGGGAGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAG--CUUGAGGGCGGU--------AAGAAAACGAAUUAUUUUUACUCUUU------------------ ...(((((((((((..((.((............)).))..))))))))).))..(--((....)))(((--------(((((.........))))))))....------------------ ( -19.20, z-score = -0.90, R) >dp4.chr2 6396330 94 + 30794189 --AGAGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUCCUUGUCAAUUUCAUCAAG--CCGGGUUCGGUCCG-----GGUCGAAACGAAUUUCCCAUGCUCUAC------------------ --.(.((((((..(((((((.((((...((((((....)))))))))))))))))--(((((.....))))-----).........)))))).).........------------------ ( -21.40, z-score = -0.19, R) >droPer1.super_3 203391 94 + 7375914 --AGAGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUCCUUGUCAAUUUCAUCAAG--CCGGGUUCGGGCCG-----GGUCGAAACGAAUUUCCCAUGCUCUUC------------------ --...(((.(((..((((((.((((...((((((....)))))))))))))))).--.))).)))((((.(-----(((((...)))....)))..))))...------------------ ( -22.80, z-score = -0.10, R) >droWil1.scaffold_181130 8297034 117 + 16660200 --AACGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAUUUACUCUAUUACCAUUGAAAUGAACACC--GAAUGUGCACAUACUCUGCAAUAUCAGGAAUGUGAAACUGCUCUCA --......(((((((((...)))))))))((.((((((.((((((((.(............)))))).)))..--)))....(((((.(.(((......)))).))))).....))).)). ( -17.40, z-score = 0.43, R) >droMoj3.scaffold_6540 23813029 103 - 34148556 --AGAGAAAUUGAUUUGAUGCAAAUUAACGACAGCUUCUUGUCAAUCUCAUGAGUUGCCCAAGAUGGAACAACGAAAUAAAAUACCGAAUUUAUGUCUACACUUU---------------- --.((((..((((((((...)))))))).(((((....)))))..))))....((((.((.....))..))))((.(((((........))))).))........---------------- ( -16.90, z-score = -0.56, R) >droGri2.scaffold_14830 2312550 102 - 6267026 --AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUGAGUUGAACAGAAAUGGUAGCCAAAGAGCAGAACCGAAUUCAUGUUUACACUU----------------- --...(((((((((..((.((............)).))..)))))))))..(((((((((((((.((((.((......))...))))..))).)))))).))))----------------- ( -23.10, z-score = -1.24, R) >droVir3.scaffold_12855 8620604 90 - 10161210 --AGAGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCA----UUAAAGGAAAAC---------AAAAUAAAACCGAAUUUAUGUCUACGCUUU---------------- --...(((((((((..((.((............)).))..))))))))).----...((((.....---------...(((((......))))).......))))---------------- ( -13.76, z-score = -0.72, R) >consensus __AGGGAAAUUGAUUUGAUGCAAAUUAAUGACAGCUUCUUGUCAAUUUCAUCAAGUUCCGAAUUGCGAAUG_C__AAAAAAAAACGAAUUUUACGUACUCUUU__________________ .....(((((((((..((.((............)).))..)))))))))........................................................................ (-11.66 = -12.07 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:59 2011