| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,784,453 – 6,784,561 |
| Length | 108 |
| Max. P | 0.650543 |
| Location | 6,784,453 – 6,784,561 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.97 |
| Shannon entropy | 0.26019 |
| G+C content | 0.38930 |
| Mean single sequence MFE | -16.18 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6784453 108 + 23011544 GUGUAGCAAAGCGAAAGCAUUUCGAAAACCAAAAAAGUAAUCAUGAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCGCACCUAAAAAA-AAAAAAAAAAUACAAC ((((......((....))........................(((((((((..(((....)))..))....)))))))..))))........-................ ( -17.10, z-score = -1.66, R) >droAna3.scaffold_12916 8363137 103 + 16180835 GUGUAACAAAGAAAAAGUAUUUCCAAAAC--AGAAAUUAACAAAAAACCCGCUGAACCGGUUCGACUAGAAGGUUCAUCGCCGCGUAAAAAAUAAAAACAACAAC---- (((.............(((((((......--.)))))..))........((.((((((...((.....)).)))))).)).))).....................---- ( -12.20, z-score = -0.04, R) >droEre2.scaffold_4929 15701046 97 + 26641161 GUGUAGCAAAGCGAAAGCAUUUCGAAAACCAAAAA-GUAAUCAUGAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCACACCUAAA--A-AAA-ACAAC------- ((((......((....)).................-......(((((((((..(((....)))..))....)))))))..)))).....--.-...-.....------- ( -16.80, z-score = -1.40, R) >droYak2.chr2L 16200093 101 - 22324452 GUGUAGCAAGGCGAAAGCAUUUCGAAAACCAAAAAAGUAAUCAUAAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCGCACCUAAAUAA-AAAUACAAC------- ((((......((....))..................................((((((..(((...)))..))))))...))))........-.........------- ( -16.80, z-score = -1.13, R) >droSec1.super_3 2323206 99 + 7220098 GUGUAGCAAAGCGAAAGCAUUUCGAAAACCAAAAAAGUAAUCAUGAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCGCACCUAAA--A-AAAUACAAC------- ((((......((....))........................(((((((((..(((....)))..))....)))))))..)))).....--.-.........------- ( -17.10, z-score = -1.35, R) >droSim1.chr2L 6585712 99 + 22036055 GUGUAGCAAAGCGAAAGCAUUUCGAAAACCAAAAAAGUAAUCAUGAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCGCACCUAAA--A-AAAUACAAC------- ((((......((....))........................(((((((((..(((....)))..))....)))))))..)))).....--.-.........------- ( -17.10, z-score = -1.35, R) >consensus GUGUAGCAAAGCGAAAGCAUUUCGAAAACCAAAAAAGUAAUCAUGAACCCACUGAACCGGUUCUCUGAGAAGGUUCAUCCGCACCUAAA__A_AAAUACAAC_______ ((((......((....))..................................((((((..(((...)))..))))))...))))......................... (-14.15 = -14.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:03 2011