| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,925,090 – 4,925,196 |
| Length | 106 |
| Max. P | 0.695417 |
| Location | 4,925,090 – 4,925,196 |
|---|---|
| Length | 106 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Shannon entropy | 0.50662 |
| G+C content | 0.56197 |
| Mean single sequence MFE | -35.55 |
| Consensus MFE | -11.69 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4925090 106 - 27905053 GGUCGCAGGUGCGACUCGGUGGCACCUCCCACUUUUCCCAUUGGGCGAG------GCCUCUCCAUC---AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA- (((((((((((.(....((.(((..(.((((..........)))).)..------)))...)).((---((((((......(((....))).)))))))))))))))).))))..- ( -39.40, z-score = -2.32, R) >droSim1.chr3R 11127226 112 + 27517382 GGCCGCAGGUGCGACUCGGUGGCACCUCCCAAUUUUCCCAUUGGACGAGGUCCCUGUCCCUCCAUC---AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA- (((.(((((((.(...(((.((.((((((((((......)))))..))))))))))........((---((((((......(((....))).)))))))))))))))).).))..- ( -36.20, z-score = -1.20, R) >droSec1.super_0 4164617 112 + 21120651 GGCCGCAGGUGCGACUCGGUGGCACCUCCCACUUUUCCCAUUGGACGAGGUCCCUGUCCCUCCAUC---AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA- (((.(((((((.(....(((((......))))).......((((((((((.(((((.........)---))))...))))........))))))......)))))))).).))..- ( -34.50, z-score = -0.65, R) >droYak2.chr3R 8971908 104 - 28832112 AGUCGCAGGUGCGACUUUGC-CCAGCACCCACUUUUUCC-UUGAGGGA------CGUCCCUCCAUC---AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA- .((((((((((.(.......-..................-..(((((.------...)))))..((---((((((......(((....))).)))))))))))))))).)))...- ( -30.60, z-score = -1.68, R) >droEre2.scaffold_4770 1069521 105 + 17746568 GGUCGCAGGUGCGACUCGGC-CCUCCUGCCGCUUUUCCCAUUGGGGGA------CCUCCCGCCAUC---AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA- (((((((((((.(...((((-......))))..........((((((.------...))).)))((---((((((......(((....))).)))))))))))))))).))))..- ( -38.20, z-score = -2.00, R) >droAna3.scaffold_13340 9083089 100 + 23697760 GGUCGCAGGUGUAACCUU---CCACAUCCCUCCCCCUCUUGUGGAAGU-----CUCUACAUC-------AGGGUUUCCUUUGACACAUGUCAAAGUCUGACCACUUGCAGACCCA- (((((((((((((..(((---(((((.............)))))))).-----...))))))-------..((((..(((((((....)))))))...))))...))).))))..- ( -37.82, z-score = -4.56, R) >dp4.chr2 6381242 109 + 30794189 GGUCGCAGGUGUUACUGCAGGGCACACUCUAUCUCCA--UCUCUCUCU-----CUCUGCAUCUAUCAGGAGGGUUUCCUUUGACACAUGUCAAAGUCUGACCACUUCCAGCCCCCG ((..((((......)))).((((..............--.......((-----(.(((.......))))))((((..(((((((....)))))))...)))).......)))))). ( -33.40, z-score = -2.61, R) >droPer1.super_3 188997 111 + 7375914 GGUCGCAGGUGUUACUGCAGGGCACACUCUAUCUCCAUCUCUCUCUCU-----CUCUCCAUCUAUCAGGAGGGUUUCCUUUGACACAUGUCAAAGUCUGACCACUUCCAGCCCCCG ((..((((......)))).((((.........................-----..((((........))))((((..(((((((....)))))))...)))).......)))))). ( -34.30, z-score = -3.39, R) >consensus GGUCGCAGGUGCGACUCGGUGGCACCUCCCACUUUUCCCAUUGGACGA_____CUCUCCCUCCAUC___AGGGUUUCCUUUGACACAUGUCCAACUCUGACCACUUGCAGACCCA_ ....(((((((..........................................................(((....)))..(((....)))..........)))))))........ (-11.69 = -11.94 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:57 2011