| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,914,032 – 4,914,143 |
| Length | 111 |
| Max. P | 0.643526 |
| Location | 4,914,032 – 4,914,143 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.49573 |
| G+C content | 0.50723 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.32 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4914032 111 - 27905053 ACGAGCAGACAAGUCCUGUGUAUUCCACACUCUCCUGCCCACCCCCUCCCCUCUGCUCGCCACUCCAUAGCACU---CGGCGUCCAAAUACCGAUUGUUGGUUUGCUUAGCAAU .((((((((..((....((((.....))))....))...............)))))))).((..(((..(((.(---(((..(....)..)))).))))))..))......... ( -22.83, z-score = -1.18, R) >droSim1.chr3R 11116268 87 + 27517382 ACGAGCAGACAAGUCCUGUGAAUGCCACC-----------------UCUCCACU-----CCACUCACU--CACU---CAGCGUCCAAAUACCGAUUGUUGGUUUGCUUAGCAAU ..((((((((.(((...((((.((.....-----------------........-----.)).)))).--.)))---(((((((........)).)))))))))))))...... ( -16.74, z-score = -0.45, R) >droSec1.super_0 4153683 104 + 21120651 ACGAGCAGACAAGUCCUGUGUAUCCCACCUCUCUACUCCCCUCCCGUCUCCACU-----CCACUCACU--CACU---CAGCGUCCAAAUACCGAUUGUUGGUUUGCUUAGCAAU ..((((((((.((....(((.....)))....))....................-----.........--....---(((((((........)).)))))))))))))...... ( -14.60, z-score = -0.18, R) >droYak2.chr3R 8960669 101 - 28832112 ACGAGCAGACAAGUACUGUGUACCCCACUCAAU-------------UCCCCUCUUAUCGGUACUCUAAAGUACGGUACGCCAUCCAAAUACCGAUUGUUGGUUUGCUUAGCAAU ..((((((((..(((((..(((((.........-------------............))))).....)))))((((...........))))........))))))))...... ( -22.60, z-score = -1.35, R) >droEre2.scaffold_4770 1057746 85 + 17746568 ACGAGCAGACAGGUCCUGUGUAUCCCACUC--------------------------CCGGUACUCGAAAGCACU---CGCCAUCCAAAUACCGAUUGCUGGUUUGCUUAGCAAU ..((((((((.(((...(((.....)))..--------------------------.(((((...((..((...---.))..))....)))))...))).))))))))...... ( -20.10, z-score = -0.60, R) >consensus ACGAGCAGACAAGUCCUGUGUAUCCCACCC________________UCCCCACU___CGCCACUCAAUAGCACU___CGGCGUCCAAAUACCGAUUGUUGGUUUGCUUAGCAAU ..((((((((.......(((.....))).................................................(((((((........)).)))))))))))))...... (-13.40 = -13.32 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:54 2011