| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,898,316 – 4,898,416 |
| Length | 100 |
| Max. P | 0.795719 |
| Location | 4,898,316 – 4,898,416 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 59.59 |
| Shannon entropy | 0.69709 |
| G+C content | 0.66304 |
| Mean single sequence MFE | -40.52 |
| Consensus MFE | -18.56 |
| Energy contribution | -17.88 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.70 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4898316 100 + 27905053 ACAUAUUGUUGGCAGCCGCGGCCACCGCUGCCUGAGCAGCUGCUGCAGUCGCCGGCAGAC--CAACGGCGGCCAGCUGCUGUUGUUGCUGCUGCCGCUGGCG .....((((((((.((.(((((....(((((....))))).))))).)).)))))))).(--((.(((((((.(((.((....)).)))))))))).))).. ( -51.60, z-score = -1.16, R) >droGri2.scaffold_14830 2269398 85 + 6267026 ACAUAUUGUUGGCCGCCGCGGCAACGGCCGCCUGUGCGGCUGCUGCUGUUGCCGGCAGGC--CCAC---AGCCAGCUGCUGACGCUGACG------------ .....((((.(((((((((((((.(((((((....))))))).)))))....)))).)))--).))---)).((((.......))))...------------ ( -41.80, z-score = -1.24, R) >droMoj3.scaffold_6540 23770720 85 + 34148556 ACAUAUUGUUCGCUGCGGCCGCAACUGCCGCCUGGGCCGCUGCCGCUGUGGCCGGCAGAC--CGAC---CGCCAGCUGCUGGCGUUGACG------------ .....((((..((..((((.(((.(.(((.....))).).))).))))..))..))))..--((((---.(((((...)))))))))...------------ ( -36.50, z-score = -0.20, R) >droWil1.scaffold_181130 8258915 88 - 16660200 ACAUGUUAUUUGCAGCGGCUGCCACAGCAGCCUGAGCAGCUGCCGCUGUGGUGGGCAAGC--CAACGGCAGCCAAUUGUUGCCUCUGACG------------ ....((((...(((((((((((....))))))......(((((((...((((......))--)).))))))).....)))))...)))).------------ ( -39.10, z-score = -1.27, R) >droPer1.super_3 5927670 79 + 7375914 ACAUGCAGCUGGGGGUUCGAGUGGUCGCUGGCAGUGCCGCUGCUGCCGUAGCUGUAGAUCUGCGACUUGGACUGGCUGC----------------------- ....((((((...((((((((((((..(.((((((......)))))))..)))(((....))).)))))))))))))))----------------------- ( -33.60, z-score = -0.62, R) >consensus ACAUAUUGUUGGCAGCCGCGGCAACCGCCGCCUGAGCAGCUGCUGCUGUGGCCGGCAGAC__CAAC___AGCCAGCUGCUG_CGCUGACG____________ .......((((((.((.(((((....)))))....))..(((((((....)).)))))............)))))).......................... (-18.56 = -17.88 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:52 2011