| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,888,338 – 4,888,444 |
| Length | 106 |
| Max. P | 0.664727 |
| Location | 4,888,338 – 4,888,444 |
|---|---|
| Length | 106 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 66.79 |
| Shannon entropy | 0.62034 |
| G+C content | 0.49197 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4888338 106 - 27905053 UAAGUCCGAGUGUGAGGAUGGUGGGGCGACUUGUAUAAAAUGGGUAUCGGUAAAGUUUGUAUCUUUCAGCUUCGGAAA-ACCGAAGCUCAGCCCUUUACACUGCCAA ...((((........))))((((((((.(((..(.....)..)))......................((((((((...-.))))))))..))))).......))).. ( -29.81, z-score = -0.75, R) >droPer1.super_3 5918116 94 - 7375914 UAUGUCAAAAC-UGUGAGUUGUGUGUGGGUGUGCGUUCGAUCGGAAAC--UGAGAGGAGGAUUGAUUGGUCU-------ACUGAUCGUUGGGAAUACAUACGGA--- ...........-......(((((((((....(.((..(((((((...(--(....)).(((((....)))))-------.))))))).)).)..))))))))).--- ( -22.70, z-score = -0.63, R) >dp4.chr2 23146177 94 - 30794189 UAUGUCGAAAC-UGUGAGUUGUGUGUGGGUGUGCGUUCGAUCGGAAAC--UGAGAGGAGGAUUGAUUGGUCU-------ACUGAUCGUUGGCAAUACAUACGGA--- ...........-......(((((((((....(((...(((((((...(--(....)).(((((....)))))-------.)))))))...))).))))))))).--- ( -26.20, z-score = -1.32, R) >droEre2.scaffold_4770 1032571 107 + 17746568 UAAGUCCGAGUGUGAGGAUGGUGGGGCUACUUGUAUAAAAUGGGGUUCGGUUGGGGAGGCAUCUUUCCACUUCGGAAACACCGAAGCUCAGCCCUUCACACUGCCGA ........(((((((((..(((.(((((.((..(.....)..))..((((((((..((....))..)))....(....))))))))))).))))))))))))..... ( -39.30, z-score = -1.45, R) >droYak2.chr3R 8934962 107 - 28832112 UAAGUCCGAGUGUGAGGAUGGUGGGGCUACGUGUAUAAAAUGGGGUUCGCUUGGGGUGGCAUCUUUCCACUUCGGAAAAACCGAAGCUCAGCCCUUCACACUGCCUG ........(((((((((..(((.(((((.(((.......))).((((...(((((((((.......)))))))))...))))..))))).))))))))))))..... ( -36.30, z-score = -0.90, R) >droSec1.super_0 4128383 106 + 21120651 UAAGUCCGAGUGUGAGGAUGGUGGGGCGACUUGUAUAAAAUGGGGAUCGGUACGGUUGGUAUCUUUUAGCAUCGGAAA-ACCGAAGCUCAACCCUUCACACUGCCAA ........(((((((((..(((.((((..((..(.....)..))..(((((.((((.(.((.....)).)))))....-))))).)))).))))))))))))..... ( -33.00, z-score = -1.02, R) >droSim1.chr3R 11090821 106 + 27517382 UAAGUCCGAGUGUGAGGAUGGUGGGGCGACUUGUAUAAAAUGGGGAUCGGUACGGUUGGUAUCUAUUAGCUUCGGAAA-ACCGAAGCUCAGCCCUUCACACUGCCAA ........(((((((.......(((((..((..(.....)..))(((.(((((.....))))).)))((((((((...-.))))))))..))))))))))))..... ( -34.61, z-score = -1.29, R) >consensus UAAGUCCGAGUGUGAGGAUGGUGGGGCGACUUGUAUAAAAUGGGGAUCGGUAAGGGUGGUAUCUUUUAGCUUCGGAAA_ACCGAAGCUCAGCCCUUCACACUGCCAA ........(((((((((..(((.((((.....((..((.(((...(((.....)))...))).))...)).((((.....)))).)))).))))))))))))..... (-14.52 = -14.10 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:50 2011