| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,881,384 – 4,881,478 |
| Length | 94 |
| Max. P | 0.848321 |
| Location | 4,881,384 – 4,881,478 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 127 |
| Reading direction | forward |
| Mean pairwise identity | 73.69 |
| Shannon entropy | 0.45094 |
| G+C content | 0.54158 |
| Mean single sequence MFE | -36.45 |
| Consensus MFE | -14.45 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4881384 94 + 27905053 ----------------------CCACCUGAUGGGUGGGGGUU-------GGGGUGGUG-UGGCGAAGGUGACGCCACCACAGCAAGA--AUCCGAAACCACUUGACUGGAUUUGGAUUUUGGUUUU- ----------------------(((((.....)))))..(((-------(.(((((((-(.((....)).)))))))).)))).(((--(((((((.(((......))).))))))))))......- ( -46.10, z-score = -4.95, R) >droPer1.super_3 5912284 81 + 7375914 ---------------------ACCAAUUGAUGGGACGGGAG--G-----GCGGUGGGG-GAGUGA--GUGACGCCACCA-------------UGAAACCACUUGACUGGAUUUGGAUUUUGGUUU-- ---------------------(((((.....((..(((..(--(-----(.(((..((-..(((.--....)))..)).-------------....))).)))..)))..))......)))))..-- ( -20.70, z-score = 0.09, R) >dp4.chr2 23140339 81 + 30794189 ---------------------ACCAAUUGAUGGGGCGGGAG--G-----GCGGUGGGG-GAGUGA--GUGACGCCACCA-------------UGAAACCACUUGACUGGAUUUGGAUUUUGGUUU-- ---------------------(((((....(..(.(((..(--(-----(.(((..((-..(((.--....)))..)).-------------....))).)))..)))..)..)....)))))..-- ( -20.30, z-score = 0.48, R) >droAna3.scaffold_13340 9024166 119 - 23697760 UCGGGUGGUUGGGUGAGGUGACCCGCUUCGUGGGGAAGGGU--------AUGGUGGAGCUUGUGGAGGUGACGCCACCACAUCACGAUUAUACGAAACCACUUGACUGGAUUUGGAUUUUGGAUUUU ((((((((((((((......))))...((((((.....(((--------..((((..((((....))))..)))))))...))))))........))))))))))(..((.......))..)..... ( -40.10, z-score = -1.43, R) >droEre2.scaffold_4770 1025671 99 - 17746568 ----------------------CCACCUGAUGGGCGGGGGAUUGGUU--GGGGUGGUG-GAGCGAAGGUGACGCCACCACAACAAGA--AUCCGAAACCACUUGACUGGAUUUGGAUUUUGGUUUU- ----------------------((.((((.....))))))....(((--(.(((((((-..((....))..))))))).)))).(((--(((((((.(((......))).))))))))))......- ( -42.40, z-score = -3.96, R) >droYak2.chr3R 8928018 98 + 28832112 ----------------------CCACCUGAUGGGCGGGGGA--UUGGUUGGGGUGGUG-GGGCGAAGGUGACGCCACCACAACAAGA--AUCUGAAACCACUUGACUGGAUUUGGAUUUUGGUUU-- ----------------------((.((((.....)))))).--...((((.(((((((-..((....))..))))))).)))).(((--(((..((.(((......))).))..)))))).....-- ( -39.50, z-score = -3.31, R) >droSec1.super_0 4121485 101 - 21120651 ----------------------CCACCUGAUGGGCGGGGGAUGGGUUGGGUGGUGGUG-GGGCGAAGGUGACGCUACCACAGCAAGA--AUCCGAAACCACUUGACUGGAUUUGGAUUUUGGUUUU- ----------------------((.((((.....)))))).........(((((((((-..((....))..)))))))))(((.(((--(((((((.(((......))).)))))))))).)))..- ( -40.60, z-score = -3.22, R) >droSim1.chr3R 11083851 101 - 27517382 ----------------------CCACCUGAUGGGCGGGGGAUUGGUUGGGGGGUGGUG-GGGCGAAGGUGACGCCACCACAGCAAGA--AUCCGAAACCACUUGACUGGAUUUGGAUUUUGGUUUU- ----------------------((.((((.....))))))....((((...(((((((-..((....))..))))))).)))).(((--(((((((.(((......))).))))))))))......- ( -41.90, z-score = -3.07, R) >consensus ______________________CCACCUGAUGGGCGGGGGA__G_____GGGGUGGUG_GGGCGAAGGUGACGCCACCACAGCAAGA__AUCCGAAACCACUUGACUGGAUUUGGAUUUUGGUUUU_ ......................(((((((.....)))).............(((((.(...((....))..).)))))..............((((.(((......))).)))).....)))..... (-14.45 = -13.88 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:49 2011