| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,880,105 – 4,880,195 |
| Length | 90 |
| Max. P | 0.744958 |
| Location | 4,880,105 – 4,880,195 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 83.04 |
| Shannon entropy | 0.35497 |
| G+C content | 0.46674 |
| Mean single sequence MFE | -25.61 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.42 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.744958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4880105 90 - 27905053 GAAGAGAAUAACAAACAGCGAAUAUGGCAAAUAAAGCUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .................((...((((((....(((((.....)))))..)))))---)..((((..(((((((......))))))))))))). ( -29.20, z-score = -2.39, R) >droPer1.super_3 5911348 90 - 7375914 GAGGAGAAUAACAAACAGCAAAUAUGGCAAAUAAAGCUCAUUGCUUUUGGUCAU---GAGGCAUCAGUUGAGCUCCAAUGCUCAACGGGAGCG ..((((..((((.....((...((((((....(((((.....)))))..)))))---)..))....))))..))))...((((.....)))). ( -27.10, z-score = -2.68, R) >dp4.chr2 23139402 90 - 30794189 GAGGAGAAUAACAAACAGCAAAUAUGGCAAAUAAAGCUCAUUGCUUUUGGUCAU---GAGGCAUCAGUUGAGCUCCAAUGCUCAACGGGAGCG ..((((..((((.....((...((((((....(((((.....)))))..)))))---)..))....))))..))))...((((.....)))). ( -27.10, z-score = -2.68, R) >droAna3.scaffold_13340 9023169 89 + 23697760 -AAGAGAACAACAAACUGCAAAAAUGGCAAAUAAAACUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAUCGGGCGCA -.............((((.......(((((..........)))))..))))..(---(((.((.....(((((......)))))..)).)))) ( -19.00, z-score = 0.39, R) >droEre2.scaffold_4770 1024399 90 + 17746568 GAAGAGAAUAACAAACAGCGAAUAUGACAAAUAAAGCUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .................((...((((((....(((((.....)))))..)))))---)..((((..(((((((......))))))))))))). ( -29.80, z-score = -3.09, R) >droYak2.chr3R 8926763 90 - 28832112 GAAGAGAAUAACAAACAGCAAAUAUGGCAAAUAAAGCUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .................((...((((((....(((((.....)))))..)))))---)..((((..(((((((......))))))))))))). ( -29.20, z-score = -2.73, R) >droSec1.super_0 4120345 90 + 21120651 GAAGAGAAUAACAAACAGCGAAUAUGGCAAAUAAAGCUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .................((...((((((....(((((.....)))))..)))))---)..((((..(((((((......))))))))))))). ( -29.20, z-score = -2.39, R) >droSim1.chr3R 11082608 90 + 27517382 GAAGAGAAUAACAAACAGCGAAUAUGGCAAAUAAAGCUCAUUGCUUUCGGUCAU---GCGGCCUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .................((...((((((....(((((.....)))))..)))))---)..((((..(((((((......))))))))))))). ( -29.20, z-score = -2.39, R) >droVir3.scaffold_13047 2029400 82 - 19223366 ------AGCAACAAACAAGUAAAAUGGCAAAG-AA----ACUGCUUUUGGUCAUGCGGCGGCAUCAGUUGAGCUUCAGUGCUCAACGGGCGCA ------.((.((......))...(((((.(((-(.----.....)))).))))))).(((.(....(((((((......))))))).).))). ( -23.90, z-score = -0.73, R) >droMoj3.scaffold_6540 11282986 82 + 34148556 ------AGUAACAAACAAACAAAAUGGCAAAG-AA----ACUGCUUUUGGUCAUGCGGCGGCAUCAGUUGAGCUUCAGUGCUCAACGGGCGCA ------.................(((((.(((-(.----.....)))).)))))...(((.(....(((((((......))))))).).))). ( -22.70, z-score = -0.81, R) >droGri2.scaffold_14906 8876665 83 - 14172833 ------AACAACAAACAAACAAAAUGGCAAAGAAA----ACUGUUUUUGGUCAUGCGGCGGCAUCAGUUGAGCUUCAGUGCUCAACGGGCGCA ------.................(((((.(((((.----....))))).)))))...(((.(....(((((((......))))))).).))). ( -23.20, z-score = -1.45, R) >droWil1.scaffold_181089 738104 82 - 12369635 ---CGAAAUAAC-GACA--AAAUAUGGCAAAUAAAGCUCACUACUUUUGGUCAU---GCGGCAUCAGUUGGGCUCCAUUGCUCAGCAGGCG-- ---.........-....--...((((((....((((.......))))..)))))---)..((....(((((((......)))))))..)).-- ( -17.70, z-score = -0.25, R) >consensus GAAGAGAAUAACAAACAGCAAAUAUGGCAAAUAAAGCUCAUUGCUUUCGGUCAU___GCGGCAUCAGUUGAGCUCCAAUGCUCAACGGGCGCA .......................(((((.....................)))))...(((.(....(((((((......))))))).).))). (-16.15 = -16.42 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:48 2011