| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,879,814 – 4,879,934 |
| Length | 120 |
| Max. P | 0.561131 |
| Location | 4,879,814 – 4,879,934 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.00 |
| Shannon entropy | 0.48631 |
| G+C content | 0.50754 |
| Mean single sequence MFE | -34.47 |
| Consensus MFE | -14.98 |
| Energy contribution | -16.68 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4879814 120 + 27905053 CCUAAGUUACAAGCCGGCUCUACUUAGCCGCCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAAGCAUGAACGAUAAGCCCGCCGUGCCGAGCCCUAAUAACUUGAUGAUCAGCG ..(((((((..((..(((((.....((((((((....)))))))).....(((((........))))).(((((..((.......)).))))).)))))))..))))))).......... ( -34.70, z-score = -1.29, R) >droAna3.scaffold_13340 9022883 91 - 23697760 CCUAAAAGAUACUCCAUAUCUAA---------CAGAUGGCCAGUUCGUU-UAUUGAAUGCCGAUUGCAAUCGAGAGUGAUAAGCCCUAUUAGCUGUAGGGG------------------- .........((((((........---------.....(((..(((((..-...))))))))(((....)))).))))).....((((((.....)))))).------------------- ( -20.20, z-score = -0.57, R) >droEre2.scaffold_4770 1024099 120 - 17746568 CCUAAGUCAUAAGGUUGAUCCACUUUGCCGGCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAGGCAUGAAUGAUAAGCCCGCCGAGCCGAGCCCUAAUAACUUGAUGAUCGGCG ((...(((((.((((((.........((((((...((((((.(((((((.(((((........))))))))..)))).....))))))...)))).)).....)))))).))))).)).. ( -35.34, z-score = -0.46, R) >droYak2.chr3R 8926451 120 + 28832112 CCUAAGUCAUGAGCCUGCUCCACUUAGCCACCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAAGCAUGAAUGAUAAGCACGCCGAGCCGAGCCCUAAUAACUUGAUGAUCGGCG .....(((((...(.((((......((((((((....)))))))).....(((((........))))))))).).))))).....((((((..((((.........))))....)))))) ( -36.20, z-score = -1.85, R) >droSec1.super_0 4120064 120 - 21120651 CCUAAGUUAUAAGCCGGCACUACUUAGCCGCCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAUGCUUGAAUGAUAAGCCCGCCGUGCCGAGCCCUAAUAACUUGAUGAUCAGCG ..((((((((..((((((((.....((((((((....)))))))).((.((((((........))))))(((((.....)))))..)).)))))).))....)))))))).......... ( -40.20, z-score = -3.08, R) >droSim1.chr3R 11082317 120 - 27517382 CCUAAGUUAUAAGCCGGCACUACUUAGCCGCCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAUGCUUGAAUGAUAAGCCCGCCGUGCCGAGCCCUAAUAACUUGAUGAUCAGCG ..((((((((..((((((((.....((((((((....)))))))).((.((((((........))))))(((((.....)))))..)).)))))).))....)))))))).......... ( -40.20, z-score = -3.08, R) >consensus CCUAAGUUAUAAGCCGGCUCUACUUAGCCGCCCAUGUGGGUGGUUCGCCAUACGGAAAUUCACCUGUAAGCAUGAAUGAUAAGCCCGCCGAGCCGAGCCCUAAUAACUUGAUGAUCAGCG ............((((((((......(((((((....)))))))......(((((........))))).....................)))))).))...................... (-14.98 = -16.68 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:48 2011