| Sequence ID | dm3.chr2L |
|---|---|
| Location | 656,207 – 656,323 |
| Length | 116 |
| Max. P | 0.693136 |
| Location | 656,207 – 656,323 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 85.79 |
| Shannon entropy | 0.25507 |
| G+C content | 0.46080 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -24.07 |
| Energy contribution | -24.10 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 656207 116 + 23011544 CCACCACAUAACAUAUAAAGCAUGGGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGGGGAUCGUCUGGGAUUCA ...(((.............((.(((.((((........))))...((....)).............(((((.....)))))....)))))(((((((...))))))))))...... ( -29.60, z-score = -1.40, R) >droSim1.chr2L 667130 116 + 22036055 CCACCACAUAACAUAUAAAGCAUGGGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGUGGAUCGUCUGGGAUUCA ...(((.............((.(((.((((........))))...((....)).............(((((.....)))))....)))))(((((((...))))))))))...... ( -29.60, z-score = -1.29, R) >droSec1.super_14 638114 107 + 2068291 CCACCACAUAACAU---------GGGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGUGGAUCGUCUGGGAUUCA ((((((.......)---------))(((......((...(((...((....)).))).......))(((((.....)))))...)))...(((((((...))))))))))...... ( -28.50, z-score = -1.23, R) >droYak2.chr2L 646935 108 + 22324452 --------CCACAUAUAAAGCAUGAGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGUGGAUCGUCUGGGAUUCA --------(((........((....(((......((...(((...((....)).))).......))(((((.....)))))...))).))(((((((...))))))))))...... ( -27.80, z-score = -1.31, R) >droEre2.scaffold_4929 714667 108 + 26641161 --------CCACAUAUAAAGCAUGAGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGUGGAUCGUCUGGGAUUCA --------(((........((....(((......((...(((...((....)).))).......))(((((.....)))))...))).))(((((((...))))))))))...... ( -27.80, z-score = -1.31, R) >droAna3.scaffold_12916 1647868 96 + 16180835 --------------------CAUGCUGCAUGGAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUUAUUUUGCAUAGCCAGCGACGAUCGUCGAUUGUCUGGCUCUUU --------------------..((((((((........))))...((....)))))).........(((((.....)))))..(((((..(((((((...)))))))))))).... ( -29.30, z-score = -1.59, R) >consensus ________UAACAUAUAAAGCAUGGGGCAUGAAAGGAAGUGCACAGCGAAAGCAGCAAAUUAAACCGCAAAAUCAUUUUGCAUAGCCAGCGACGAUCGUGGAUCGUCUGGGAUUCA .........................(((......((...(((...((....)).))).......))(((((.....)))))...)))...(((((((...)))))))......... (-24.07 = -24.10 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:31 2011