| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,879,173 – 4,879,265 |
| Length | 92 |
| Max. P | 0.862320 |
| Location | 4,879,173 – 4,879,265 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 73.02 |
| Shannon entropy | 0.50730 |
| G+C content | 0.38134 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -10.81 |
| Energy contribution | -12.48 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4879173 92 - 27905053 GACUAGAGCUGGAAAAUCACAAAAUCGUAGAUGUAGAUGAUGCGUCAGACGUUUACGUUUACAUUUACAUUUAGUGGCGUUUUUA--AGCUGAA--- ......((((.(((((((((.((((.(((((((((((((..(((.....)))...))))))))))))))))).)))..)))))).--))))...--- ( -28.70, z-score = -3.77, R) >droSim1.chr3R 11081657 92 + 27517382 GACUCAAGCUGGAAAAUCACAAAAUCUCAGAUGUAGAUGAUGCGUCAGACGUUUACGUUUACAUUUACAUUUAGUGGCGUUUUCA--AGCUAAA--- ......((((.(((((((((.((((...(((((((((((..(((.....)))...)))))))))))..)))).)))..)))))).--))))...--- ( -24.80, z-score = -2.80, R) >droSec1.super_0 4119404 92 + 21120651 GACUCAAGCUGGAAAAUCACAAAAUCUCAGAUGUAGAUGAUGCGUCAGACGUUUACGUUUACAUUUACAUUUAGUGGCGUUUUCA--AGCUAAA--- ......((((.(((((((((.((((...(((((((((((..(((.....)))...)))))))))))..)))).)))..)))))).--))))...--- ( -24.80, z-score = -2.80, R) >droYak2.chr3R 8925795 86 - 28832112 GGCUCUAGCUGGAAAAUCAGAAAAUCGCAGAUGAAGAUGAUGCGUCAGACGUUUACA------UUUACGUUUAGUGGCGUUUUCA--AGCUGAA--- .....(((((.((((((((....(((...))).....))))(((((((((((.....------...)))))...)))))))))).--)))))..--- ( -19.70, z-score = -0.03, R) >droEre2.scaffold_4770 1023441 91 + 17746568 GGCUCAAGCUGGAAAAUCACAAAAUCGCAGAUGAAGAUGAUGCGUCAGACGUUUACAUUUACGUUUACGUUUAGUGG-GUUUUCA--AGCUGAA--- ...(((.(((.(((((((.((....((.(((((.(((((..(((.....)))...))))).))))).)).....)))-)))))).--)))))).--- ( -24.30, z-score = -1.70, R) >droWil1.scaffold_181089 737532 96 - 12369635 GAUUGGGCCUUCACCCACAAUACGUUUUAAAUA-GGUUUUUGAUUUAGCUGCUUUUUUUUUUGCACUUCUAUCUUGACUUUUCCGUUGGCUGUAAAA ...((((......))))...((((((......(-((((...(((..((.(((..........)))))...)))..))))).......))).)))... ( -14.32, z-score = 0.12, R) >consensus GACUCAAGCUGGAAAAUCACAAAAUCGCAGAUGUAGAUGAUGCGUCAGACGUUUACGUUUACAUUUACAUUUAGUGGCGUUUUCA__AGCUGAA___ ......((((.(((((((((.((((...(((((.(((((..(((.....)))...))))).)))))..)))).)))..))))))...))))...... (-10.81 = -12.48 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:47 2011