| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,872,778 – 4,872,876 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 4,872,778 – 4,872,876 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Shannon entropy | 0.43220 |
| G+C content | 0.50393 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.42 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 4872778 98 - 27905053 ----AAUAAACUCCACUGGCGUUAGUUUCGGCGUUGCUAAUGUCACCAGUUUUGGCAACAUGU---ACAUGGAUCACCAGUACUUUGUGCCCGCUCCGGCCACUG ----.........((.((((...(((...(((((((((((...........))))))))..((---((.(((....))))))).....))).)))...)))).)) ( -27.00, z-score = -0.91, R) >droEre2.scaffold_4770 1017033 98 + 17746568 ----AAUCAACUCCGCUGGCGUUGGUGUCGGCGUUGCUAAUGUCACCAGUUUUGGCAACAUGU---AUAUGGAUCACCAGUACUUUGUGUCCGCUCCAACCCCUG ----.............((.(((((.((.(((((((((((...........))))))))..((---((.(((....))))))).....))).)).))))).)).. ( -28.20, z-score = -1.24, R) >droYak2.chr3R 8919428 98 - 28832112 ----AAUCAACUCCGCUGGCGUUGGUGUCGGCGUUGCUAAUGUCACCAGUUUCGGGAACAUGU---AUAUGGAUCACCAGUACUUUGUGUCCGCUCCGACCACUG ----.((((((.((...)).))))))(((((.((.....((((..((......))..))))..---....(((.(((.........)))))))).)))))..... ( -25.20, z-score = 0.46, R) >droSec1.super_0 4113089 102 + 21120651 AUUUAAUGAACUCCACUGGCGCUGGUGUCGGCGUUGCUAAUGUAACCAAUUUUGGCAACACGU---ACAUGGAUCACCAGUACUUUGUGCCCGCUCCAGCCACUG ..................(.(((((.((.(((((((((((.((.....)).))))))))..((---((.(((....))))))).....))).)).)))))).... ( -33.20, z-score = -2.31, R) >droSim1.chr3R 11074955 102 + 27517382 AUUUAAUGAACUCCACUGGCGCUGGUGUCGGCGUUGCUAAUGUCACCAAUUUUGGCAACACGU---ACAUGGAUCACCAGUACUUUGUGCCCGCUCCAGCCACAG ...............(((..(((((.((.(((((((((((...........))))))))..((---((.(((....))))))).....))).)).)))))..))) ( -35.90, z-score = -3.00, R) >droAna3.scaffold_13340 9015813 89 + 23697760 ---------------GUUAAAUUCCUCU-GGUGUCCCGAACGCCAUGAAUUUUGGCAAUAUGUACAACAUGGAUCACCAGUACCACAUCUCGACAUCGGCUGCGG ---------------...........((-(((((((.....((((.......))))...(((.....)))))).))))))..((.((.(.((....))).)).)) ( -22.30, z-score = -0.97, R) >consensus ____AAUCAACUCCACUGGCGUUGGUGUCGGCGUUGCUAAUGUCACCAAUUUUGGCAACAUGU___ACAUGGAUCACCAGUACUUUGUGCCCGCUCCAGCCACUG ....................(((((.((.(((((((((((...........))))))))(((....((.(((....)))))....)))))).)).)))))..... (-16.36 = -16.42 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:46 2011