| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,857,881 – 4,857,975 |
| Length | 94 |
| Max. P | 0.731092 |
| Location | 4,857,881 – 4,857,975 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 93.30 |
| Shannon entropy | 0.11392 |
| G+C content | 0.46378 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -26.66 |
| Energy contribution | -26.94 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4857881 94 + 27905053 UGCGUCACUGGCUUUGCUUUGCUUUUGCUUCGCCUGCUUUGGCCAAAAAAGAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGUCAAAAAA (((((...((((((((((((.(((((.....(((......)))...)))))))))))...))))))...))))).((((.......)))).... ( -25.70, z-score = -0.00, R) >droEre2.scaffold_4770 1001933 88 - 17746568 UGCGUCAUUGGCUUUACUUUGCUUUUGCUUCGCCUGUUUUGGCCAAA---GAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGCCAAA--- (((((..(((((((((...(((((((..((.(((......))).)).---))))))).)))))))))..))))).(((.((....))))).--- ( -32.50, z-score = -3.13, R) >droYak2.chr3R 8904640 89 + 28832112 UGCGUCACUGGCUUUGCUUUGCUUUUGCUUCGCCUGUUUUGGCCAAA--AGAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGCCAAA--- (((((...((((((((((((.((((((....(((......)))))))--))))))))...))))))...))))).(((.((....))))).--- ( -28.70, z-score = -1.15, R) >droSec1.super_0 4098439 92 - 21120651 UGCGUCAUUGGCUUUGCUUUGCUUUUGCUUCGCCUGCUUUGACCAAAAAAGAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGCCAACG-- .......(((((((((((((((((((((((((..((((((...........)))))).))))))..)))).)))...))).)))))))))..-- ( -28.20, z-score = -1.61, R) >droSim1.chr3R 11060296 92 - 27517382 UGCGUCAUUGGCUUUGCUUUGCUUUUGCUUCGCCUGCUUUGGCCAAAAAAGAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGCCAACG-- (((((..(((((((((((((.(((((.....(((......)))...)))))))))))...)))))))..))))).(((.((....)))))..-- ( -30.60, z-score = -1.55, R) >consensus UGCGUCAUUGGCUUUGCUUUGCUUUUGCUUCGCCUGCUUUGGCCAAAAAAGAGAGCAUUGAAGCCGAGAAUGCAAUUGAGCCAAAGCCAAA___ (((((..(((((((((...(((((((.....(((......))).......))))))).)))))))))..))))).(((.((....))))).... (-26.66 = -26.94 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:44 2011