| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,829,233 – 4,829,327 |
| Length | 94 |
| Max. P | 0.942370 |
| Location | 4,829,233 – 4,829,327 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.49 |
| Shannon entropy | 0.63187 |
| G+C content | 0.39630 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -11.45 |
| Energy contribution | -10.95 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4829233 94 + 27905053 ----------UAAUGAUCUUUUAAACUAAU--CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGUAAAUCCUUG-- ----------....................--..............((((....(((((........))))).((((..(((....)))..))))....))))...-- ( -18.20, z-score = -1.29, R) >droSim1.chr3R 11030134 94 - 27517382 ----------UAAUGAUCUUUUAAACUAAU--CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGUAAAUCCUUG-- ----------....................--..............((((....(((((........))))).((((..(((....)))..))))....))))...-- ( -18.20, z-score = -1.29, R) >droSec1.super_0 4070254 94 - 21120651 ----------UAAUGAUCUUUUAAACUAAU--CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGUAAAUCCUUG-- ----------....................--..............((((....(((((........))))).((((..(((....)))..))))....))))...-- ( -18.20, z-score = -1.29, R) >droYak2.chr3R 8875636 94 + 28832112 ----------UAAUGAUCUUCUUAACUAAU--CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGAAAAUCCUUG-- ----------....(((.((((........--..........(((((....)..(((((........)))))))))...(((....))).....)))).)))....-- ( -18.50, z-score = -1.58, R) >droEre2.scaffold_4770 973383 94 - 17746568 ----------UUAUGAUCUUGGUAACUAAU--CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGAAAAUCCUUG-- ----------...((((...(....)..))--))............((((....(((((........))))).((((..(((....)))..))))....))))...-- ( -18.60, z-score = -0.76, R) >droAna3.scaffold_13340 8970401 96 - 23697760 ----------UUUUUAUCUUGUAUAUUAAUUUCACUCUUACAUUGCUGGUACUUGCCGACUAAUAUUUCGGCGUAAUCGGGCUUCGGCCAUUGCGGAAAGUUACUA-- ----------.........((((...............))))....(((((((((((((........)))))(((((..(((....))))))))...))).)))))-- ( -21.46, z-score = -1.71, R) >dp4.chr2 3436174 82 - 30794189 ------------------UAUUGGACUCUUU-AAAUCUUACAUUGCGGGUAUUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUAUAUCUUGA------- ------------------.............-..............((((((..(((((........))))).......(((....)))...))))))...------- ( -15.10, z-score = -0.39, R) >droPer1.super_6 3492126 82 - 6141320 ------------------UAUUGUACUCUUU-AAAUCUUACAUUGCGGGUAUUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUAUUUCUUGA------- ------------------....((((((...-..............))))))..(((((........))))).......(((....)))............------- ( -15.23, z-score = -0.72, R) >droWil1.scaffold_181089 2248173 90 + 12369635 -------------UAAUAAUGUUUAAUGUU-----UCUUACAUUGCUGGAAUUUGGCGGCUUAUAUUGCGGCGCAGUCUAGCCUCAGCCAUUUUCGCCUGUUUAUUUA -------------..........((((((.-----....))))))...(((..((((((((...(((((...)))))..))))...))))..)))............. ( -20.30, z-score = -0.45, R) >droMoj3.scaffold_6540 11557417 98 - 34148556 AUUAUUAUUAUUAUAGACAUAUAU-ACAUUU----ACGUACAGCAUGGGUGUUUGUCGACUUAUGUUUCUGCGCAAGCGAGCCUCCGCCAUUUUCUUUCAUAU----- ...............((((.....-((((((----(.(.....).))))))).))))....((((.....((....))(.((....))).........)))).----- ( -13.60, z-score = 0.84, R) >droGri2.scaffold_14906 9178432 89 + 14172833 ----------UCAUGCUCUUAUGUUGUUUUU----ACGUACAUCAUGGGCAUUUGUCGACUAAUGUUUCGGCGCAAUUGAGUCUCCACCAUUUUGUUUUUUAG----- ----------..((((((..(((((((....----))).))))...))))))..(((((........)))))((((.((.((....))))..)))).......----- ( -15.60, z-score = -0.51, R) >consensus __________UAAUGAUCUUUUAAACUAAU__CACUCUUACAUUGCGGGUACUUGCCGACUUAUAUUUCGGCGCAAACGGGCUUCUGCCAUUUUGGUAAAUCCUUG__ ............................................(((((.....(((((........)))))((......)).))))).................... (-11.45 = -10.95 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:41 2011