| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,827,662 – 4,827,718 |
| Length | 56 |
| Max. P | 0.828804 |
| Location | 4,827,662 – 4,827,718 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 75.73 |
| Shannon entropy | 0.46572 |
| G+C content | 0.48214 |
| Mean single sequence MFE | -17.83 |
| Consensus MFE | -6.37 |
| Energy contribution | -5.48 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4827662 56 + 27905053 CAUUAAGCUAAGCUUACAAGACGGAGUUCGG-AAAUUGAACGC-GACGAAAGCUCGCC ...(((((...))))).........(((((.-....)))))((-(((....).)))). ( -12.70, z-score = -0.94, R) >droSim1.chr3R 11028517 56 - 27517382 CAUUAAGCUAAGCUUACAAGACGGAGCUCAG-AAAUUGAACGC-GACGAAAGCUCGCU ..((((.((.(((((........))))).))-...))))..((-(((....).)))). ( -14.60, z-score = -1.74, R) >droSec1.super_0 4068638 56 - 21120651 CAUUAAGCUAAGCUUACAAGACGGAGCUCAG-AAAUUGAACGC-GACGAAAGCUCGCU ..((((.((.(((((........))))).))-...))))..((-(((....).)))). ( -14.60, z-score = -1.74, R) >droYak2.chr3R 8873985 57 + 28832112 CAUUAAGCUGAGCUUACAAGACGGAGCUCAGCAAAUGAAAUGC-GACGAAAGCUCGCU ((((..(((((((((........))))))))).))))....((-(((....).)))). ( -23.30, z-score = -4.65, R) >droEre2.scaffold_4770 971764 56 - 17746568 CAUUAAGCUGAGCUUACAAAACGGAGCUCAGCAAGU-AAACGC-GACGAAAGCUCGCU ......(((((((((........)))))))))....-....((-(((....).)))). ( -23.50, z-score = -4.90, R) >droWil1.scaffold_181089 2245734 57 + 12369635 UGUUAAGCUUGGCUUACAGCGCUGCCUCUGUCGACGUUGACGUUGACGUCGACGUAA- .....((((((.....))).)))......(((((((((......)))))))))....- ( -18.30, z-score = -1.17, R) >consensus CAUUAAGCUAAGCUUACAAGACGGAGCUCAG_AAAUUGAACGC_GACGAAAGCUCGCU ...(((((...))))).......(((((......................)))))... ( -6.37 = -5.48 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:40 2011