Locus 9191

Sequence ID dm3.chr3R
Location 4,815,365 – 4,815,479
Length 114
Max. P 0.562736
window12602

overview

Window 2

Location 4,815,365 – 4,815,479
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.69
Shannon entropy 0.37490
G+C content 0.59557
Mean single sequence MFE -34.72
Consensus MFE -24.57
Energy contribution -24.77
Covariance contribution 0.20
Combinations/Pair 1.33
Mean z-score -1.18
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.14
SVM RNA-class probability 0.562736
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 4815365 114 - 27905053
GUCGCUCCCGUUCCCGCAACUACAGUUCCACCUGCUCCACUGCCGCUUCCCACUGCCGCUGAUGCAACUGCUGUUGUCGUCGUUGUGGUAGUCUGGGUUGUGGGCACACUACUA
.........((.(((((((((.(((........((......))........(((((((((((((((((....)))).)))))..)))))))))))))))))))).))....... ( -39.10, z-score =  -2.05, R)
>droSim1.chr3R 11016165 105 + 27517382
GUCACUCCCGUUCCCGCAACCACAGUUCCACCUGUUCC---------UCCCACUGCCGCUGAUGCAACUGCUGUUGUCGUCGUUGUGGUGGUCUGGGUAGUGGCCACACUACUG
(((((((((............((((......))))...---------..((((..(.((.((((((((....)))).)))))).)..))))...))).)))))).......... ( -34.70, z-score =  -1.66, R)
>droSec1.super_0 4056310 105 + 21120651
GUCACUCCCGUUCCCGCAACCACAGUUCCACCUGUUCC---------UCCCACUGCCGCUGAUGCAACUGCUGUUGUCGUCGUUGUGGUGGUCUGGGUAGUGGCCACACUACUG
(((((((((............((((......))))...---------..((((..(.((.((((((((....)))).)))))).)..))))...))).)))))).......... ( -34.70, z-score =  -1.66, R)
>droYak2.chr3R 8861570 105 - 28832112
GUCACUCCAGUUCCCGCAACCAGGGUUCCACCUGCUCC---------UCCCACUGCCGCUGAUGCAACUGCUGUCGUCGUCGUUGUAGUGGUCUGGGUAGUGGCCACACUACUG
......((((..........((((......))))....---------..(((((((.((.(((((.((....)).).)))))).))))))).))))((((((....)))))).. ( -34.50, z-score =  -1.00, R)
>droEre2.scaffold_4770 959269 105 + 17746568
GUCAAUCCUGUUCCCGCAACGACGGUUCCACCUGCUCC---------UCCCACUGCCGCUGAUGCAACUGCUGUUGUUGUCGUUGUAGUGGUUUGGGUGGUGGCCACACUACUG
(((.....(((....)))..)))((..(((((.((((.---------..(((((((.((.((((((((....)))).)))))).)))))))...)))))))))))......... ( -33.10, z-score =  -0.85, R)
>droAna3.scaffold_13340 8956561 90 + 23697760
GCGACUCCCGUGCCUGAAAUGACAG----------------------UCCCUCCGCUA--GACGCCGCUGUUGUGGUCGUGGCGGUGGUUACUUGGGUGGUGGCCACACUGCUG
..((((..(((.......)))..))----------------------))((.(((((.--.(((((((....)))).)))))))).)).......((..(((....)))..)). ( -32.20, z-score =   0.15, R)
>consensus
GUCACUCCCGUUCCCGCAACCACAGUUCCACCUGCUCC_________UCCCACUGCCGCUGAUGCAACUGCUGUUGUCGUCGUUGUGGUGGUCUGGGUAGUGGCCACACUACUG
.................................................(((((((.((.((((((((....)))).)))))).)))))))....(((((((....))))))). (-24.57 = -24.77 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:40 2011