| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,806,429 – 4,806,525 |
| Length | 96 |
| Max. P | 0.905543 |
| Location | 4,806,429 – 4,806,525 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 61.19 |
| Shannon entropy | 0.75845 |
| G+C content | 0.46222 |
| Mean single sequence MFE | -27.56 |
| Consensus MFE | -10.82 |
| Energy contribution | -9.15 |
| Covariance contribution | -1.67 |
| Combinations/Pair | 1.81 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4806429 96 - 27905053 --UCUCUGGGGGAGCGUGCUCCCCACUCUCUUGAGGAGACAUUAAGGG-AAAAUGUAAGAGAGCAGUAUUGGGGAUAGUUU-AAAGGUGCUAAUUAUUUC --(((((.((((((....))))))..(((((((((....).)))))))-).......)))))..((((((...((....))-...))))))......... ( -31.50, z-score = -2.16, R) >droPer1.super_3 4164653 94 - 7375914 UCUCGCUGAGAGCGCCAAAACCGUUGGGGCUUCGAGAGCU-UUACAAAGAGAGAGCGUAGGAACGAGUACAAAAAUGUCU--AAUGGGGAUGAGUGU--- .((((((..((((.((((.....)))).))))..)).(((-((........))))).......)))).(((...((.((.--....)).))...)))--- ( -21.40, z-score = 0.55, R) >dp4.chr2 21380853 94 - 30794189 UCUCGCUGAGAGCGCCAAAACCGUUGGGGCUUCGAGAGCU-UUACAAAGAGAGAGCGUAGGAACGAGUACAAAAAUGUCU--AAUGGGGAUAAGUGU--- .((((((..((((.((((.....)))).))))..)).(((-((........))))).......)))).(((....(((((--.....)))))..)))--- ( -22.00, z-score = 0.10, R) >droAna3.scaffold_13340 3557081 80 - 23697760 --UCUCUGAGAAAGC------UCCACUCUCUUGGGGGGCA--UAAAACUAAAGAGAACGACAGC----UCAAGGGUGGCCCAUGGGGAGCUAAU------ --..........(((------(((.(((....)))((((.--....(((...(((........)----))...))).))))....))))))...------ ( -24.80, z-score = -0.98, R) >droEre2.scaffold_4770 950225 94 + 17746568 ----UCUUUGGGAGCGUGCUCCCUGCGCUCUUGGGGAGACAUUAAGAG-AAAUAAUACGAGAGCAAUAUUGGGGAUAGUUU-CAAGGUGCUAAUUAUUUC ----((((..(((((((.......)))))))..))))..........(-(((((((.....((((...(((..(....)..-)))..)))).)))))))) ( -29.70, z-score = -2.47, R) >droYak2.chr3R 8852628 94 - 28832112 ----UCUCUGGGAGCGUGCUCCCCACUCUCUUGGGGAGACAUUAAGAG-AAAUAAUACGAGAGCUAUUUGGGGGAUAGUUU-CAAGGUGCUAAUUAUUUU ----((((.(((((....)))))...(((((((((....).)))))))-)........))))((..((((..(.....)..-))))..)).......... ( -27.50, z-score = -1.07, R) >droSec1.super_0 4047336 97 + 21120651 --UCUCUGGGGGAGCGUGCUCCCCACUCUCUUGGAGAGACAUUAAGGGAAAAAAGUAAGAGAGCAGUAUUGGGGAUAGUUU-CAAGGUGCUAAUUAUUUC --(((((.((((((....)))))).(((((...)))))......)))))...((((((...((((...(((..(....)..-)))..))))..)))))). ( -31.80, z-score = -2.05, R) >droSim1.chr3R 11005589 97 + 27517382 --UCUCUGGGGGAGCGUGCUCCCCACUCUCUUGGAGAGAAAUUAAGGGAAAAAAGUAAGAGAGCAGUAUUGGGGAUAGUUU-CAAGGUGCUAAUUAUUUC --(((((.((((((....)))))).(((((...)))))......)))))...((((((...((((...(((..(....)..-)))..))))..)))))). ( -31.80, z-score = -2.26, R) >consensus __UCUCUGAGGGAGCGUGCUCCCCACUCUCUUGGAGAGACAUUAAGAG_AAAAAGUAAGAGAGCAAUAUUGGGGAUAGUUU_CAAGGUGCUAAUUAUUUC ...((((..(((((.(((.....))).)))))..)))).....................................((((.........))))........ (-10.82 = -9.15 + -1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:39 2011