| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,780,904 – 4,780,960 |
| Length | 56 |
| Max. P | 0.683524 |
| Location | 4,780,904 – 4,780,960 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 97.02 |
| Shannon entropy | 0.05804 |
| G+C content | 0.29167 |
| Mean single sequence MFE | -7.77 |
| Consensus MFE | -8.04 |
| Energy contribution | -7.77 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.62 |
| Structure conservation index | 1.04 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4780904 56 + 27905053 AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.90, z-score = -0.72, R) >droSim1.chr3R 10979366 56 - 27517382 AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.90, z-score = -0.72, R) >droSec1.super_0 4021812 56 - 21120651 AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.90, z-score = -0.72, R) >droYak2.chr3R 8825242 56 + 28832112 AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.90, z-score = -0.72, R) >droEre2.scaffold_4770 923923 56 - 17746568 AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.90, z-score = -0.72, R) >droAna3.scaffold_13340 3530836 56 + 23697760 CAGUGCUUAAGUUUAUUUGGUUAACUAGUUGGAACACAAAACGAAACGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -7.10, z-score = -0.08, R) >consensus AAGUGUAUAAGUUCAUUUGGUUAACUAGUUGGAACACAAAACGAAAUGAAAUGAAA ...........(((((((.(((......(((.....))).....))).))))))). ( -8.04 = -7.77 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:34 2011